Anoplopoma fimbria (sablefish): 129105849
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Entry
129105849 CDS
T09102
Symbol
cxxc1b
Name
(RefSeq) CXXC-type zinc finger protein 1b
KO
K14960
COMPASS component SPP1
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129105849 (cxxc1b)
03036 Chromosome and associated proteins [BR:
afb03036
]
129105849 (cxxc1b)
Transcription factors [BR:
afb03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
129105849 (cxxc1b)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
129105849 (cxxc1b)
COMPASS/SET1 complex (yeast)
129105849 (cxxc1b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
CpG_bind_C
zf-CXXC
PHD
PHD_5
DUF7813
MutS_IV
Motif
Other DBs
NCBI-GeneID:
129105849
NCBI-ProteinID:
XP_054473035
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Position
17:6763454..6768959
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AA seq
571 aa
AA seq
DB search
MDSELSDFDHAPGPETSSMEGENAPLYCICRKPDINCFMIGCDNCNEWFHGHCINITEKK
AKAIREWYCTRCKDKNSSLEIKYRTKKNREKEPEYDRGSDRQYSTPSTPDYKSERRRGSK
VKRSVRMCGECEPCRRTEDCAQCDFCKDMKKFGGPNKIRQKCRFRQCEVRARKMLRVKDE
ELSLQERRENAYHRRRRYSEDYDSEADLYQQYKTAGLNNNMAWNSDEDDEQPFSPVVRKK
AVKVKHVKRREKKFDKKKESRRHKQKQKHKDRTRYSEKGDLRDNTGQRQCLGPSCIEVAR
LNSKYCSEDCGMKLAANRIYEILPQRIQQWQQSPCIAEEHGKKQLERIRREQQNARLRLT
EMERRFHELEGIIAKAKQQAVQQDEEVNEGDSEDTDLQIFCVSCSHPINPKVALRHMERC
YAKYESQTSFGSMFPTRIEGATRLFCDVYNPQSKTYCKRLQVLCPEHSRDPKIPVDEVCG
CPLVKNVFELTGDYCRVSKRKCNKHYNWEKLRRAEVDLERVRVWYKLDELFEQERNVRTA
MTNRAGLLALMLHQTIQHDPVTTDLRSNKDR
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggacagcgaattgtctgactttgaccatgcaccagggcctgagaccagcagtatggag
ggggagaacgcacccctgtactgcatctgccggaaaccagacatcaactgtttcatgatt
ggctgtgataactgtaatgagtggttccatggccactgcattaatatcactgaaaaaaaa
gcgaaggcaatccgggaatggtattgcacgagatgcaaagataaaaactcttcactggaa
ataaagtatagaacaaagaaaaaccgagagaaggagcctgagtatgacagaggttctgac
agacagtacagcaccccgagcactcctgactataagagtgaaaggcggcgtggatctaaa
gtgaagcgttcagtccgaatgtgtggagaatgtgagccctgcagaaggactgaggactgt
gcccagtgtgacttctgcaaggacatgaaaaagtttggaggccccaacaaaatcagacag
aagtgcaggttcaggcagtgtgaggttcgagccaggaaaatgctgcgtgtgaaggatgag
gaattgtctttgcaagaaaggagggaaaatgcctaccacagacggagacgatactcagag
gactacgacagtgaggcggatctctaccagcagtacaagaccgcagggcttaacaacaac
atggcatggaatagtgatgaagacgatgagcagcctttcagtcccgtcgtgcgtaaaaaa
gctgtgaaggtgaagcacgtcaaaagaagagaaaagaagtttgacaagaaaaaggagtca
cgacgccacaaacagaagcagaagcacaaagacagaaccagatacagcgagaagggcgac
ctccgggacaacaccggacagcgtcagtgtctgggaccaagctgtattgaggtggcaaga
ctcaactccaaatactgctctgaggactgtggcatgaagttagctgccaatcggatctat
gagatcctccctcagcgtatccagcagtggcagcagagtccctgcatcgccgaggagcac
ggtaagaagcagctggagcgcatccgtcgggaacagcagaacgcccggctgcgcctcaca
gagatggagcgacgcttccacgaactggaaggcatcatcgccaaggccaagcagcaggcg
gttcagcaggacgaggaggtgaatgaaggtgacagcgaggacacagacctgcagattttc
tgtgtgtcttgtagtcatcccatcaatccaaaagtggcgctgagacatatggagagatgt
tacgcaaagtatgagagtcagacttcctttggttccatgtttcctacaaggatagaagga
gcaaccagactgttctgtgatgtgtacaatccccaaagcaaaacctattgtaagaggctg
caggttttgtgtccagaacattccagagatcctaagatcccagtggatgaagtgtgtgga
tgtcctctggtgaagaatgtgtttgagctgactggagactactgcagggtctccaaaagg
aaatgcaacaagcattacaactgggaaaagctgaggagagcagaggtggacttggagcga
gtcagggtgtggtacaagttggatgagctcttcgaacaggagcggaatgtcaggactgct
atgaccaacagagctggtctgctcgctctgatgttgcaccaaactattcagcacgaccct
gtgacgaccgatctccgtagcaacaaggatagatag
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