Anoplopoma fimbria (sablefish): 129105858
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Entry
129105858 CDS
T09102
Symbol
prdm2b
Name
(RefSeq) PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb00310
Lysine degradation
afb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
129105858 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129105858 (prdm2b)
03036 Chromosome and associated proteins [BR:
afb03036
]
129105858 (prdm2b)
Enzymes [BR:
afb01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
129105858 (prdm2b)
Transcription factors [BR:
afb03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
129105858 (prdm2b)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
129105858 (prdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
zf-C2HE
zf-C2H2_jaz
zf-H2C2_2
Motif
Other DBs
NCBI-GeneID:
129105858
NCBI-ProteinID:
XP_054473051
LinkDB
All DBs
Position
17:complement(18038634..18054132)
Genome browser
AA seq
1737 aa
AA seq
DB search
MAFIGGTVETLDEIPGHVWKDLPDCLSLRPSAINQSRVGVWATQFIPKGKRFGPFVGEKK
KRSQVTSNVYMWEVYFPSRGWMCVDATDPMKGNWLRYVNWARSGEEQNLFPLEINRAIYY
KVLKPIGPGEELLVWYTVEDNPEITAALEEERASSLSKKHSPRRAKRARRKLLEKARQAG
LGGFKKTSVTKPTGLEMWDGEEGLKEEDERPSTLGPSQELQETHPMRSTDRRDVEDMSTV
TTDRGNREEEEEEEEDADDLEEPSEVKQQTAQRSPAADSILNKQPGSLLNSGEESHKDPQ
GKVESSSLAGQEPQVDPDPDLDPDPDGDLEGDPHGESYPCQHCERHFSTRQGLERHIHIH
AITNQQTQLFKCRYCSKSFGSQVGRRRHERRHESGLKKRPGSLAGTANLLSPVMQTDGSS
PDCTSPPTHYIAIGSQFTGGTLHNSEMQRKESGPYADRPFILDENGESKELHPCKYCNKA
FGTHTNMRRHQRRIHERHLLPKGVRRKGMLLQEASVPKQQQQQQQQQQQQPDESPSTSPP
TVYVPSADTEDEVDRDDYAVDISKNISENLSFYIDGKIVSTSSVSSCDVIEVDSRSAALF
GLDTVIISPNQISQALKVEGRTGATKQVSSIGQPAGKRRTSTPPFVPSLKVETESASLTA
SSSSSSSSTSSTSNLLVGGLFQQAGDSSAFQREKTVYLSPKLKQLLQTQDIQKSTIALIT
ESHRLASPLSVTQLPGASGRFKRRTSSPPSSPQLSPACKTESCKSDAVSSFALKVPKLER
LNASPPVSLLDKEDGDSLNLSENNMHGQTSSNSGGNSCNQQPLDLSNSVSRKRDSSNKVL
GDSALDLSFHRKSSVEPELKGSPAPQPLIKKRKPNTSMLEKVLMNDYLGLPLSGEEGPSA
LANLSSLHSRSPSIATESAHPSPPALTPVTLNPSSPANSSVTSPTPPPPILPTIPSPPAM
PSSPLSQPSDSSAQRPLPVLSPKMSPRSVERDPLSDSEDNLSAEENEDEEGSHISEPQDF
PNTPLKDPANRSASLNPPEETSVDLDAIEEDVSPTVTSAVMANGKINQNHDLVSEESPAA
RSPQAESSSSSSSPPASHDPSPSLVLQSFPQIKIKEEPQPCVGELPDTNHGPPDGVAPSP
QPSAPDKPSDKTSEAEEVDLTYCKTFVCNVCEEPFKSIKELSGHISEHAADWPFKCEFCV
QLFGDAPALLAHRTALHGVGRIFVCSVCSKEFAFLCNLQQHQKDLHPNETCSHTALESGK
LRPQNYTDPSRAKEESSPSTPAPEATDEAAPHSDSDVAKEEPDVNGNHTEDGAEDPNEEL
YTTIKIMASEGGKPKAPDVRLGINQHYPSYKPPPFPYHSRSHAGSVASATNFTTHNIPQT
FSTAIRCTKCGNSFDNMPELHKHILACASASDKKRYTPKKNPIPLKQIVKSPNGVVSPSA
AVAGQSPFRRMGQPKRLNFNQDTNGKTKMSALSKKKNQLVQKAISQRNRAATTAKKATVK
VEEETPSNVCPHCSREFTYPASLCKHMAVSCPMKPVVKRGKKGLAEVKKEGGSAVDRNIN
LRKKASDCEMPQTEPQRKPLGKTRARSSGAADPEPSQANKGKPAATLGRLKRPASFPAQV
STGKKMKKAQIQSLPPTPSAPDTPSDAAQQRPAMRMQRMGKEAAPKRLAEAKSPPPAPPP
PPQQLKKEERFSLRTRDRVGGPVTRSLQMVNAAPSVDVKTEEPPIQEPKETQEVLMK
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggctttcatcggagggacagtggaaactctagatgaaattccaggtcatgtgtggaag
gatttgccggactgtttgagtctcagaccttctgctataaatcaaagccgcgttggtgtc
tgggccactcagttcatccctaaaggcaagaggttcggcccgtttgttggggagaagaaa
aaaaggtcccaggtgaccagtaacgtgtacatgtgggaggtttatttcccatcgcggggc
tggatgtgtgttgacgccacagaccccatgaagggcaactggcttcgatacgtgaactgg
gcccgctccggtgaagagcagaatctgttccccctggagatcaacagagccatttactac
aaagttttaaagcctatcgggccgggagaggagctgctggtgtggtacaccgtggaagac
aaccccgagataacagctgcactggaggaagaaagagccagcagtctgagcaagaaacac
tcacccaggagggcgaagcgagccagaagaaagctgctggagaaagccagacaggctggt
ttgggtggattcaagaaaacgagtgtaaccaaacctactggcttggagatgtgggatgga
gaagaaggtctgaaggaggaggacgagaggccttcaaccttggggccctcacaggaactc
caggaaacccatcccatgagaagcactgaccgtagggatgtggaggacatgtcaacagtg
acaactgaccggggaaacagggaggaggaagaagaggaggaggaggatgctgatgatttg
gaggaaccgagtgaagtaaagcagcaaactgctcagcgatcacctgcagctgattccata
ctaaacaagcagccgggctcattgctgaacagtggcgaagaaagccataaagatccacag
ggaaaggttgagtcttcctcgcttgcaggacaagaaccacaggttgatcctgatcctgat
cttgaccccgaccccgatggtgaccttgaaggcgatccccatggagagtcatatccctgt
cagcactgtgagcgccatttctccaccagacagggtctggaacgtcacatacacattcac
gccatcactaaccagcaaacacaactgttcaagtgccggtactgcagtaaatccttcggc
tcacaggtggggcggcggcggcacgagagacggcatgagagtgggcttaagaagaggcct
ggctctctggcaggcactgccaatctactcagtcctgtgatgcagactgatggttcaagt
cccgactgcaccagcccgcccactcactatatagccatagggtcccagttcactggagga
actctgcacaactctgagatgcagagaaaggagtcggggccgtatgccgaccgtcctttt
atattagatgaaaacggggagtcaaaggaactccatccctgcaagtactgtaataaagcg
tttggcacacacacaaacatgcgtcgacaccaacgtagaatacacgaacggcacttgtta
ccgaagggagttcgcaggaaaggcatgctgctgcaagaggcatcggtgcccaagcagcag
cagcagcagcagcagcagcagcagcagcagcccgatgagtcacccagcaccagccctccg
accgtctacgtgcccagtgcggacacagaagacgaggtggacagggacgattacgccgtt
gacatatccaaaaacatctctgagaatctgagcttctacattgacggcaagatcgtgtcc
accagttcagtgagcagctgtgatgtgatagaggtggactccagatctgcagccctgttt
ggtctggacacagtcatcatcagcccgaatcagatcagtcaggcactgaaggtggagggt
cgaactggcgccacaaagcaagtctccagcatcggccagccagcaggaaaaagaagaaca
tccacacccccgtttgttcccagccttaaagtcgagacggagtcagcatctctcacagcc
tcttcatcgtcttcatcatcctctacatcttccacatctaacttgttagtgggtggactg
ttccagcaagctggcgattcatcagcatttcagcgagagaagactgtttatctctcacct
aagctcaaacagctccttcagacacaagacattcagaaatcaaccatcgccctgataaca
gaaagccatagactggcctcaccgctgtcagtcacgcagcttccaggggcttcgggcagg
tttaagaggagaacatcctctcctccgtcatctcctcaactcagtcctgcatgtaaaaca
gagagctgtaaatccgacgcggtgagctcattcgccctaaaggtgccaaagctggagaga
ctcaatgcgtcgcctcctgtgagcctactggacaaggaagatggagacagcctgaacctt
tctgaaaataatatgcacggccaaacctcatctaatagcggtggaaattcctgtaatcag
cagcccctggatctgtcaaactccgtcagcaggaagagggacagctcgaacaaggtgctc
ggggattcagctctagatttaagcttccatcggaagagcagcgtcgagcctgaattaaag
ggaagtccagcaccgcagccactgataaaaaagagaaagcccaacaccagcatgcttgaa
aaggtgctgatgaatgattatttaggtctacctttgtcaggagaggagggcccctcggcc
ttagcaaacttgagttctctccattctcgctctccaagcattgcgacagagtctgcccac
ccgtctccacccgctctgacccccgtcaccttgaacccgtcttcccccgctaactccagc
gtgacatccccgacaccgcctccccctatactacctaccataccgtctccgccggctatg
cctagctctcctctatctcagccttcggactcctctgcccagagacctcttcctgtcctc
tcgccaaaaatgtctccaagatcggtggaacgcgatcccctgtcagactctgaggacaat
ttgtctgctgaagaaaacgaagatgaggaagggagccatatctctgagccacaggacttc
cccaacactccacttaaagatcccgctaatcgctcggcgtcattaaaccctcctgaggag
acgtctgtagatctggacgctatcgaagaagatgtgtccccgactgtaacctccgccgtg
atggcaaatggcaaaattaaccaaaaccatgacctggtatcagaggaatctcctgctgcc
cgctcacctcaagcggaatcctcatcttcctcatcatctcctcctgcatctcacgatcca
tccccatcactggttttacaatccttccctcagattaagataaaagaggagcctcagccc
tgcgtaggtgagctgccagatacgaatcatggtcctccggacggtgttgccccttctcct
cagcccagtgctcccgataaaccgtctgataaaacctcagaggcagaggaagtcgacctg
acctactgcaagacttttgtgtgcaatgtctgcgaggagccgttcaagtccatcaaagag
ctcagcgggcacatcagtgagcacgctgcagattggcccttcaagtgtgaattctgtgtg
cagctgttcggcgacgctccggccctgctggcccatcggacagcgctgcacggagtgggc
aggattttcgtgtgctccgtttgttccaaggagtttgcatttctctgtaacctccagcag
caccaaaaagatttgcatcccaacgagacatgttcacataccgctttagagagcggcaag
cttaggccacagaactacacggatccatccagagccaaagaggaaagcagtccttcaaca
ccagcaccggaggcgactgatgaagctgctccacacagtgacagcgatgtagcaaaagaa
gagcctgacgttaacggtaatcatacagaggacggggcagaggaccccaatgaggagctg
tacactacgataaagatcatggcctcagaaggagggaagcctaaagccccggatgttcgc
cttggcattaaccaacactaccccagttataaaccacccccttttccttatcatagccgt
tcccacgccggctcggtggcctcggctactaactttaccacccacaacataccacaaact
ttcagcactgccatacgctgcaccaagtgcggcaacagctttgacaacatgcccgaactg
cacaagcacattttggcctgtgccagcgccagcgataagaagcgctacactcccaagaaa
aaccccatccccctcaagcaaatagtgaagagtccgaacggagtcgtgtcaccgtcggca
gccgtcgcaggccagagtcctttccggagaatgggtcagccaaagagacttaactttaat
caagatacgaatggtaaaacaaaaatgagtgccctcagtaagaagaaaaaccagctagtc
cagaaggcgatctcacagagaaatagagctgccaccactgcaaagaaggctactgttaaa
gttgaagaagagacgccctctaatgtttgcccccactgcagtcgggagttcacttatcct
gcgagtctctgtaaacatatggcagtcagctgtcccatgaagcctgttgttaaaaggggc
aaaaaaggtctagcagaggtgaaaaaagagggggggtcggcggtagatagaaacataaac
cttagaaagaaggcctcagactgtgaaatgccacagacagagccgcagcgtaaacccctt
ggaaagaccagagctcgtagctctggtgcagcagaccctgaaccctcccaggcaaacaaa
ggaaaacccgctgctacgctcggcagactaaagaggcccgcctcgttcccagcacaagtt
tctacaggcaaaaaaatgaagaaggcccaaattcagtctctacctcccaccccgtcagcc
cccgacactcccagtgacgctgcgcaacaacgaccagccatgaggatgcagcgtatgggc
aaagaggcagcacccaagagactagccgaggccaaatcaccaccaccagcaccaccacca
ccaccacaacagctgaagaaagaggagcggttctcccttcgaacgagggacagagtaggt
ggtccagtcaccaggagcttacagatggtcaacgccgctccttctgttgacgtgaaaaca
gaagaaccaccgattcaagagccaaaagagactcaggaagtgctgatgaagtga
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integrated database retrieval system
