Anoplopoma fimbria (sablefish): 129105880 Help Entry 129105880         CDS       T09102                                  Symbol col2a1b Name (RefSeq) collagen, type II, alpha 1b   KO K19719   collagen type II alpha Organism afb  Anoplopoma fimbria (sablefish) Pathway afb04510   Focal adhesion afb04512   ECM-receptor interaction afb04518   Integrin signaling Brite KEGG Orthology (KO) [BR:afb00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     129105880 (col2a1b)    04518 Integrin signaling     129105880 (col2a1b)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     129105880 (col2a1b)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:afb00536]     129105880 (col2a1b) Glycosaminoglycan binding proteins [BR:afb00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    129105880 (col2a1b) SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  129105880 NCBI-ProteinID:  XP_054473122 LinkDB All DBs Position 17:19510319..19554392 Genome browser AA seq 1489 aa AA seqDB search MFSFMDSRTVLLLVATQVCLLAVVRCQDEDQEDVSCIQDGQSYSDKDVWKPEPCRICVCD TGTVLCDEIVCEELKDCPKPEIPFGECCPICPADQSPPIGAPGAKGQKGEPGDITDVVGP RGPGGPMGPPGEQGNRGSRGDKGEKGNPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGN FAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSGP MGPRGPSGPSGKPGDDGEAGKAGKSGDRGPSGPQGSRGFPGTPGLPGIKGHRGYPGLDGT KGETGAVGSKGESGSSGENGAPGPMGPRGLPGERGRPGPSGVAGARGNDGLSGPAGPPGP VGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPGS KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEFGPVGM QGALGPQGEEGKRGPRGEAGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPSGA SGPKGANGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQ PGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGPAGPPGPSGPAGERGEQGQ PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEGGAAGATGPRGERGFPGERGAAGSQGLQGP RGLPGTPGTDGPKGAIGPGGAGGAQGPPGLQGMPGERGGAGIPGPKGDRGDLGEKGPEGA SGKDGGRGLTGPIGPPGPGGPNGEKGESGPAGPSGAPGTRGTPGDRGETGPPGPVGFAGP PGSDGQPGIKGEQGESGQKGDAGAPGPQGPSGAPGPAGPTGVFGPKGARGAQGPPGATGF PGAAGRVGPPGPNGNPGPAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGPAGATGEKGD AGEDGPPGPLGPSGPQGLGGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRGP PGPVGPPGLTGPAGELGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGATGASGP VGPTGKQGDRGESGAQGPSGPSGPAGARGMPGPQGPRGDKGEGGEGGERGQKGHRGFTGL QGLPGPPGQAGDQGATGPAGPSGQRGPPGPVGPSGKDGGNGLPGPIGPPGPRGRSGETGP SGPAGNPGPPGLPGPPGPGIDMSAFAGLGQIEKSPDPLRYMRADQASGNLRQHDAEVDAT LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVFCNME TGESCVKPKPASIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAPNTAAIQMTFL RLLSTEASQNLTYHCKNSVAYMDSSAGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDGC TKHTGQWGKTVMEYRSQKTSRLPIVDIAPMDIGGTDQEFGVEVGAVCFL NT seq 4470 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttatggattccaggactgtactgctacttgtagcaacccaagtttgtcta ttagccgttgtaagatgtcaagatgaagaccaggaggatgttagctgtatacaggatgga cagagctatagcgacaaggatgtgtggaaaccagagccttgtcgcatctgtgtgtgtgac actggaaccgtcctgtgtgatgaaattgtctgcgaggagctaaaagactgccccaaacct gaaatcccattcggagagtgttgccccatctgcccagctgaccagtctccacccattgga gcacctggagccaagggtcagaaaggtgaacccggagacattaccgatgttgtaggacca agaggaccaggtggcccaatgggcccaccaggagagcaaggaaaccgtggatcaagagga gacaagggagagaagggaaaccctggtccccgcggcagagatggtgagcctggcaccccc ggaaaccccggcccccccggacctccaggacctaatggaccccctggccttggtggaaac tttgctgctcagatggctggcggttttgacgagaaagctggcggcgcacagatgggtgtg atgcaaggaccaatgggccctatgggtcccagaggaccacctggccccagcggatcacct ggcccacaaggtttccaaggcaacccaggagaggctggagagcctggacagtctggcccc atgggtccccgtggcccctctggaccttctggaaaacccggagatgatggtgaggctggc aaggctggcaaatcaggtgaccgtggacctagtggacctcagggatctcgtggattccca ggaactcctggcctgcccggcatcaagggacacagaggttatccaggtcttgatggtaca aagggagagactggagctgttgggtccaagggagagtctggttcttccggagagaatggc gctcctggacctatgggacctcgtggtttgcctggtgagagaggccgtcccggacccagt ggagttgctggagcacgtggaaatgatggtttgtccggtcctgctggtccccctggcccc gtcggtccctctggagctccaggcttccctggctctcctggatcaaagggagaagctggt cctactggtgctcgtggtcctgagggtgctcagggaccccgtggagagtctgggactccc ggatcatccggaccatctggtgcttctggaaaccctggtactgatggtatccctggatcc aaaggatcagctggtgctcctggtattgctggtgctcctggtttccctggacctcgtgga cctcccgggcctcagggagcaactggacctcttgggcccaaaggaacatctggagaccca ggtatcccaggcttcaagggagaggctggacccaaaggagaatttggacccgttggtatg cagggagctcttggcccacaaggagaagaaggcaagagaggacccagaggtgaggctggt gctgctggaccacttggacctcctggagagagaggagcccccggtaaccgtggtttccct ggtcaagacggtctggctggtcccaagggagcccctggtgagcgtggaccctctggtgcc agtggtcccaagggtgccaacggtgaccccggccgtcctggagagtctggtctgcccggt gccagaggcctgactggacgccctggtgacgctggtcctcaaggcaaagttggaccttct ggagctcctggtgaggatggtcgtccaggaccccccggcccacagggagcccgtggacag ccgggtgtcatgggattccccggacccaaaggagcaactggtgagcctggcaagtctgga gagaaaggactgggtggagctcctggtctgagaggtctgcctggcaaagatggagaaacc ggccctgctggcccccccggcccttcaggccctgcgggagagagaggagagcaaggacag cctggtccttccggtttccagggtctgcctggacctcctggcccccctggtgagggaggc aagcctggagaccaaggtgttcctggagagggtggagctgctggtgctactggacccaga ggtgagcgtggtttccccggagagagaggagctgccggctctcagggtctgcagggacct cgaggtctccctggaactcctggaactgacggacccaagggagccattggacctggtggt gctggtggagctcaggggccccctggcctgcagggtatgcccggagagagaggaggtgct ggtattcctggacccaaaggagacagaggtgaccttggagagaaaggacctgaaggtgct tccggcaaagatggtggaagaggtctcactggtcccattggtcctcctggtcctggtggt ccaaacggcgagaagggtgaatctggtcctgctggtccttctggagctcctggtacccgc ggtactcctggggacaggggtgagactggacctcctgggcctgttggatttgccggacct cccggttctgacggtcagccaggaatcaagggagagcagggagaatctggacagaagggt gacgctggtgcccctggaccgcaaggaccctctggtgcccctggacctgcaggtcctact ggtgtttttggacctaaaggtgctcgtggtgctcagggacctcctggtgccactggtttc cctggagctgctggccgagttggaccccctggtcccaatggtaatcctggacctgctggt cctgccggtccatccgggaaagatggacccaagggtgtgaggggagatggtggaccccca ggcagacagggtgacgctggtctccgtggtccagctggggctactggagagaagggagat gctggagaggatggtccccctggtcccctcggtccttcaggtcctcagggtttgggtggt cagcgcggtatcgtcggtctacccggacagcgtggggagagaggtttccctggtctgcct ggaccttctggtgagcctggaaagcagggagctcctggtggcagcggagaccgtggaccc cctggacctgttggaccacctggacttactggacctgcaggagagcttggcagagagggt aacgctggatctgatggacctcctggtagagatggtgctactggaatcaagggtgatcgt ggtaacactggtcctgctggtgctcctggtgctccaggcgctactggcgcttccggccca gttggtcccaccggcaaacagggagacagaggagagtctggtgcacaaggaccttctgga ccttcaggacctgctggagctagaggaatgcctggaccccaaggaccccgtggtgacaag ggtgagggtggagagggtggtgagagaggacagaagggacacagaggcttcactggtctg cagggtctgcccggacctccgggtcaagctggagaccagggtgctactggacccgctgga ccttctggacaaagaggaccacctggacctgttggccccagtggaaaggatggtggaaac ggtctgccaggacccattggaccccctggacctcgtggtcgcagtggagagaccggtcct tctggtccagctggaaaccccggacccccaggtctccctggtccccccggccctggcatt gacatgtccgccttcgctggtctgggtcagattgaaaagtcccctgatcctcttaggtac atgagggccgaccaggcttctggaaacctccgtcagcacgatgctgaggtcgacgccacg ctcaaatctctcaacaaccagatcgagaacatccgcagcccggagggatccaagaagaac ccggctcgcacctgcagagacctgaagctctgccatcctgactggaagagcggagattac tggattgatcccaatcagggctgcaccatcgatgctatcaaggtcttctgcaacatggag acaggagagtcctgcgtcaaacccaagcctgccagcatccctcgcaagaactggtggtcc agcaagagcaaggaccgcaaacatgtctggttcggagagacaatgaatggaggattccac ttcagctatggtgatgacagcctggcacccaacactgctgccattcagatgactttcctg agactgctgtccacggaggcttctcaaaacctcacctaccactgtaagaacagcgtggcc tacatggactcctcagcgggcaacctcaagaaggccgttctgctgcagggctccaacgac gtggagatcagagctgagggcaacagccgcttcacttacagcgtgatggaggacggctgc acgaaacacacgggccagtggggcaagacagtgatggaatacagatcgcagaagacctct cgtctgcccattgtagacattgcccccatggatattggaggaacagaccaggagttcgga gtcgaagttggagcagtctgcttcttgtaa

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