Anoplopoma fimbria (sablefish): 129106006
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Entry
129106006 CDS
T09102
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129106006 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129106006 (dhx36)
03012 Translation factors [BR:
afb03012
]
129106006 (dhx36)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129106006 (dhx36)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129106006 (dhx36)
Translation factors [BR:
afb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129106006 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
AAA_19
HerA_C
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
129106006
NCBI-ProteinID:
XP_054473663
LinkDB
All DBs
Position
1:complement(21093446..21116292)
Genome browser
AA seq
1073 aa
AA seq
DB search
MSSGYGGRGGRRGKRGGRGYRDGSRERWDREGGGGGGRGGGGSSGHSTEFDQDQGGGGQQ
DRPPPHLKGREIGMWYAKYGAVRRKQGDRRSRTVVQMDEAREQHITKLLSSVQNDRPGPW
RDGREARASTSNSSGHCYFDGDMEEEEDKNKIELKSEDEEEEVTPGQKKATHKSQRYFSQ
AAVKDEPPETWDDDEEEQQEKEEKATLRKKDKDLEFLIHEVAKDSLLDDRLKRDLQSKKS
DPKYKEMLKFRERLPSYGKKEVLVDLINSNRVLVVSGETGCGKTTQVTQFILDDYINRGV
GSMCRVVCTQPRRISAISVAERVAAERAESVGNGNSCGYQIRLQSRLPRRQGSVLYCTTG
IILQWLRTDPLLSSISHLVLDEIHERNLQSDVLLVIVKEILTHRDDLKVILMSATLNAEK
FSKYFDNCPMIHIPGLTFPVEEFLLEDVVEMTRYRPQNQDRRPSWKKGFMQGRNSRPEKE
EKEAEYKESWPCYAHTLQGRYSDNTIETLEMLDNDDKIDLELIVALIRHIVLKEEEGAIL
VFLPGWDNISGLNDLLVAQQMFKSDRFIIIPLHSLMPTVNQTQVFKRPPPGVRKIVIATN
IAETSITIDDVVYVIDGGKIKETNFDTNNNISTMTAEWVSLANAKQRKGRAGRVCPGKCY
HLYNGLRASLLDAYQLPEIMRTPLEELCLQIKILNLGSIAHFLEKSLDPPTTNAVNLAIK
NLLDLNALDRSENLTALGFHLARLPVEPHIGKLILFGALLGCLDPMLTIAASLSFKDPFF
IPLGKEKMADMRRRTLSKNSKSDHLTIVNAFQGWEEAKHRGARYEREYCWDNFLSANTLQ
MLHNMKGQFAEHLMKTGFVSSRDPKDYKSNVNSDNEMLIKAVIVAGLYPKVATIRPSGSK
KRPRVKVYTQADGKVCIHPKSVNAEETEFNYKWLIYHLKMRTSSIFLYDCTEASPFSLLF
FGGDITIQKDEDQETIAVDKWIVFRSPARIAHLVKSLKKELDSLLEEKIRNPAPVDWQNR
QSKDCAVITAIIDLITTQEKSTGSTKSYGKTWATAPRGQHMHFDDDDDDDDDD
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgagttctggatacggtggtcgaggagggagaagaggcaaaagaggaggtcgaggatac
agagatggaagcagagaacgatgggacagagaaggaggaggaggaggaggaagaggagga
ggaggttcgagtggacacagtaccgaatttgaccaggaccaaggtggaggtggacaacag
gaccgtccccctccacacctgaagggacgtgagatcggcatgtggtacgcgaaatacgga
gccgtgaggaggaagcagggtgaccggagatcgcggacggtggttcagatggatgaggcc
agagaacagcatattaccaaactgctcagctctgtccaaaatgatcgccctggtccatgg
agagatggcagggaagcaagagcctctacgtcaaatagcagtggtcattgttactttgat
ggggacatggaagaggaagaggataaaaacaagattgagctcaaatctgaggacgaggag
gaagaagttactccaggccagaagaaagcaactcataaatcgcaacgttacttctcccag
gcagccgttaaagatgagcctccagaaacttgggatgatgatgaagaagagcagcaggag
aaggaggagaaagcgacactgagaaagaaagacaaggacctggagttcttaatccatgaa
gtagccaaggacagtttacttgatgaccgcttaaagagagatctgcagagcaagaaatca
gatccaaagtacaaagaaatgctgaaattcagggaaagactaccatcttatggcaaaaaa
gaggttctggttgatcttatcaactcgaaccgtgtcctggtggtgagtggggaaacaggg
tgtggaaagaccacccaggttacccagttcatcctggatgactacatcaatagaggcgtg
ggctcgatgtgtcgtgtggtctgcacgcagcctcgtcgcatcagtgccatctcggtagca
gagcgtgtagcagcagagagggcagaaagtgtagggaatggaaattcttgtggttaccaa
atccgcctgcagagccggttaccacggagacaaggttcggtcctatactgtacaacaggc
attattcttcagtggcttcgcacagatccattattgtctagcatcagccacctggtgttg
gacgaaatccacgagaggaacctgcaatctgacgttttgctcgtcattgtgaaggaaata
ctcacccatcgggatgacctcaaggtcatcctcatgagtgccacgctcaacgcagagaag
ttttcaaaatattttgacaactgtccaatgatccacatccctggtttgacgttcccagtt
gaggagttcctacttgaagacgttgtggagatgaccaggtatcgtccccagaatcaggac
cgtcgcccctcatggaagaaaggctttatgcaggggcgcaactccaggcctgagaaggag
gagaaagaggctgaatacaaggagagttggccctgttatgcacacacactgcagggcaga
tactctgacaacaccattgagacactggagatgttggacaatgatgacaagattgacctg
gagctgatcgtggcactgattcgccatattgtgctcaaggaggaggaaggagcaatcttg
gtcttccttcctggttgggacaacatcagcggtctcaatgacctgcttgtggctcagcag
atgttcaaatcagaccggttcattatcatccctctgcactccctcatgcccaccgttaat
cagacgcaggtgttcaaaaggcctcctcctggagttagaaagattgtgattgctaccaat
atagctgagaccagcatcaccatagatgacgttgtttacgttatagatggaggcaagatt
aaggagaccaactttgacaccaacaacaacatcagcacgatgacagcagagtgggtcagc
ctggccaatgccaaacagaggaaaggacgagctggcagagtgtgtccagggaagtgctat
cacctgtacaatggtctcagggccagcctgctggatgcctatcaattacccgaaatcatg
aggacaccactggaggagctctgcctgcagatcaagattttgaaccttgggtctatagct
catttcctggaaaaatccctggaccctcccactacaaacgccgtcaacctagccatcaag
aacctcctagacctgaacgccctggaccgttcagagaacctgacagcactgggtttccac
ctggctcgcctgcctgtggagcctcacattggcaaactcattctgtttggagctctgctg
ggctgcctggaccccatgctcaccattgctgcttctctcagcttcaaagaccctttcttc
atacccctgggtaaagagaagatggcagacatgaggagaaggaccctgtccaaaaactcc
aagagtgaccacctcactattgtcaatgccttccagggctgggaggaagcaaaacaccgt
ggtgccaggtatgagagggagtactgctgggacaacttcctgtctgccaatacactccag
atgctgcacaacatgaagggtcagtttgctgagcacctaatgaaaacaggctttgtcagc
agcagggaccccaaagactacaaatccaatgtcaactccgacaatgaaatgttgatcaag
gcggtgattgtagctggtctgtacccgaaggtggcaacgatcagaccatctggcagcaaa
aagaggcctagggttaaggtgtacacccaagctgatggaaaggtgtgtatccacccgaaa
tcagtgaatgctgaagagactgagttcaactataaatggctcatctaccacctcaagatg
agaacgagcagtatcttcctctacgattgcaccgaggcgtccccgttctcgctgctgttc
tttggaggagacatcacaatccagaaagatgaggaccaggagaccatcgccgtggacaag
tggatcgtcttcagatccccggcacgcatagctcaccttgtcaaaagtttaaagaaagag
ctggattctctgctggaggagaagatccgtaaccctgctcccgtggactggcaaaatcgt
cagtccaaagactgtgctgttatcacagccatcatagacctcatcaccacccaggagaag
tctacaggtagcacgaagagctatggcaaaacgtgggcgactgccccaagaggacaacac
atgcacttcgacgatgacgacgatgatgacgacgatgattag
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