KEGG   Anoplopoma fimbria (sablefish): 129106016
Entry
129106016         CDS       T09102                                 
Name
(RefSeq) tropomyosin alpha-4 chain-like isoform X1
  KO
K10373  tropomyosin 1
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04260  Cardiac muscle contraction
afb04261  Adrenergic signaling in cardiomyocytes
afb04814  Motor proteins
afb04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:afb00001]
 09140 Cellular Processes
  09142 Cell motility
   04814 Motor proteins
    129106016
   04820 Cytoskeleton in muscle cells
    129106016
 09150 Organismal Systems
  09153 Circulatory system
   04260 Cardiac muscle contraction
    129106016
   04261 Adrenergic signaling in cardiomyocytes
    129106016
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:afb04812]
    129106016
   04147 Exosome [BR:afb04147]
    129106016
Cytoskeleton proteins [BR:afb04812]
 Eukaryotic cytoskeleton proteins
  Actin filaments / Microfilaments
   Actin-binding proteins
    Tropomyosins
     129106016
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of microglial cells
   129106016
SSDB
Motif
Pfam: Tropomyosin Laminin_II CCDC39 TMF_DNA_bd Sec2p PUMA_CC Rod_CreS DUF3450 FKBP15 TMP_N Lebercilin DUF16 DUF745 CENP-F_leu_zip XhlA CALCOCO1 HAUS1 DUF1664 CLZ ERM_helical EzrA CENP-Q Nuf2_DHR10-like
Other DBs
NCBI-GeneID: 129106016
NCBI-ProteinID: XP_054473291
LinkDB
Position
2:complement(12863042..12872963)
AA seq 248 aa
MAGGSSLEAVKKKIKSLQDQADVAEDRAALLQRELNQERSARESAEGDVASLNRRIQLVE
EELDRAQERLSTALTKLEEAEKAADESERGMKVIENRAMKDEEKMELQEIQLKEAKHIAE
EADRKYEEVARKLVIIESDLERTEERAELSESKCSELEEELKTVQNNLKSLEAQAEKYSQ
KEDKYEEEIKVLTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLTRAKEEGLNVKQMLDQ
TLMEMVNI
NT seq 747 nt   +upstreamnt  +downstreamnt
atggccggtgggagctctctggaagctgttaagaagaaaatcaagtcgttgcaggaccag
gccgatgtggcggaggaccgggctgcgttattgcagcgggagttgaaccaggagaggagc
gctagggaatcagctgagggtgatgtagcctccctgaacagacgtattcagctggtggag
gaggagttggaccgcgctcaggagcgtctgtccacagcactgaccaagctggaggaggct
gagaaggctgctgatgagagcgagagaggcatgaaggttattgagaacagggcaatgaag
gacgaggagaagatggagctgcaggagatccagctgaaggaggccaaacacattgcagag
gaggctgaccgcaaatacgaggaggtggcccgtaagctggtgatcattgagagtgacttg
gaacgtacagaggagcgcgctgagctctctgagagcaaatgctctgagcttgaggaggag
ctgaaaacggtgcagaacaacctgaagtctctggaggcccaggcagagaagtactcgcag
aaggaggacaagtacgaggaggagatcaaggttcttacagacaagttgaaggaggctgag
acccgtgctgagttcgctgagagatcagtcgccaaacttgagaagaccattgatgacctg
gaggataaactcacacgtgctaaagaagaaggcctgaacgtaaagcagatgctggatcag
actctaatggagatggtaaacatttga

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