Anoplopoma fimbria (sablefish): 129106390
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Entry
129106390 CDS
T09102
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
afb03036
]
129106390 (chd5)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
129106390 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
ResIII
PHD-1st_NSD
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
129106390
NCBI-ProteinID:
XP_054473751
LinkDB
All DBs
Position
17:complement(24750968..24797265)
Genome browser
AA seq
2004 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDEDDEGERNPVPLTPLDSFFSDNDSLKQQKKKKPKKMK
EGKMPKVKKRKKEGGIQPRVDSDLEETSEVEEERERPEVGSESESSTYGPTKKKKKKPRE
KKEKKPRKKKRDEEDEDEDDDDGTTKEPKSSGQLMEEWGLEDVQYGFTEDDYKTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTSVSSSQPCSQLGPIKKAKTKEGKGPGVRKRSKSVKEVKKKPKPKKTKSKSAQSVKKK
KASSSEEEFLEESDFDDISIHSASVLSDTSGAATKKKARRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEEE
PVGEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLK
GKVQKILHWTWGEPPLPAELPAGPDGEPVDPLTNPPLKGHPEREFFVKWSGLSYWHCSWV
SELQLELYHTVMYRNYQRKNDMDEPPPFDYGSGEEELNNEKRKSKDPQYAVMEERFYRYG
IKPEWMVMHRIINHSFDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPDYESHKATYWDHRE
QIIGEDQRPLVVRKGKKLKEDHPKREVPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWER
EFELWAPDFHVVTYTGDKDSRAIIRENEFTFEDSAVKSGRKVFRMKKDTPIKFHVLLTSY
ELITIDQAVLGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPSKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVLPNGSYDGNMLVKSSGKLTLLQKMLKNLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYK
YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVVIYDSDWNPHN
DIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDEMEAARAMGDTKESEEGNVIHYDDNAISKLLDRSQDATEDTEI
QNMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN
LGKGKRIRKQVNYNDTTQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRQSRRQM
KNEKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKS
EREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHV
NGKLSSPDLIPIGMELKKLTESLSSDPNTPVPASPVATQPGTPIPPEKSEFLLGTPEDKE
TTEQDGKKRSEQESSSAEPASVPEKSSDSEESKASSEEKTADERDRTESPSAKTEPSANS
KESALKQTELSSSQTSPKMEPCKDTEKSSEKGDTESPLAKTEDKENKPAVSDDLKSEDAL
EGRLNGDKDTLEEMDESRREDKNGYKAKFMFNIADGGFTELHTLWQTEERAALSSGKMHD
IWHRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEIHKGNYLEMKNKFLARRFK
LLEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPAN
AVLHKVLNQLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGSEPPPQQ
PFSQGGFGCSQMYSSSFGGGFRGPGGQPMVNYSQMPLGPYVSVSSNGPPPPTSHLDKKSL
DSLRDVATPDLKSSKPSDVICIED
NT seq
6015 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaagacgacatggattttgaggacgat
atgccagatgaggatgacgaaggtgagcgcaaccctgttcccctcacacccctcgacagc
ttcttctctgacaacgactccctcaaacagcaaaagaagaagaagcccaaaaagatgaaa
gaggggaaaatgcccaaagttaagaagaggaaaaaggagggaggaatccagccaagagtc
gacagcgacctggaggagacctcagaggtggaggaggaacgagaacgtccagaagtcggc
tctgagagcgagagcagcacctacggcccgaccaaaaagaagaagaagaagcccagggag
aagaaagagaagaagcccaggaagaagaagagggatgaggaagatgaggacgaggacgat
gatgacgggaccacgaaagaacccaaatcatccggccagttgatggaggaatggggcctg
gaagacgttcagtacggcttcaccgaggacgactacaaaaccatcaccaactacaaggct
ttcagccagttcctcaggcctctcattgccaagaagaaccccaagatccccatgtcaaag
atgatgacggtgttaggggccaagtggcgggagttcagcgccaacaacccgttcaaaggc
gcatctgccaccgctgtggctgccgctgtggctgccgccgtggaaacggttaccgtggcg
cagccgacttccgtgagcagcagccagccgtgctctcagctggggccgatcaaaaaagcc
aaaaccaaagagggaaagggaccgggagtcaggaagagaagcaagagcgtgaaggaggtg
aagaagaaacccaagccgaagaagaccaaatcaaagtcggcccagagtgtgaagaagaag
aaagcttcctcgagtgaggaggagttcctggaggagtcagactttgatgacatcagcatc
cacagtgcctctgtgctttctgatacctcgggggccgccaccaagaaaaaggcacgacgt
gggcggaaaaaaaggaaaaaggaggacggcgacggttatgagacggaccaccaggactac
tgtgaggtttgccagcagggtggagagatcatcctgtgtgacacctgtcccagagcgtac
cacctggtctgtctggaccctgagctggagaaggcccccgagggcaaatggagctgtcca
cactgtgagaaagaggggatccagtgggaggccaaagatgaggaggaggaagaggaggag
cctgtgggcgaggaagaggatgaccacttggagttttgcagagtgtgtaaagatggagga
gagctgctgtgttgtgacacctgcccatcttcctaccacatccactgcctcaacccacct
ctccccgagatccccaacggggagtggttgtgtccacgctgcatgtgccctccactcaaa
ggtaaggtccaaaagattctgcactggacatggggagaacccccgctgccagccgaactg
cccgccggccccgacggagagccggtggatccgctgaccaaccctccgctcaagggccac
ccagagagggagttctttgtgaagtggtctggcctttcctactggcactgctcctgggtc
agcgagcttcagctggagctctaccacaccgtcatgtatcggaactaccagagaaagaac
gacatggacgaacctccgccgttcgactacggctccggcgaggaggagctcaacaacgag
aagaggaagagcaaagacccccagtatgccgtgatggaggagcgcttctaccgctacggc
atcaaaccagagtggatggtcatgcaccggatcatcaaccacagttttgataaggatggc
gatgtgcattacctgatcaagtggagggacctgccctacgaccagtgcacctgggaggtg
gatgactttgacgtcccagactacgagagtcataaagctacatactgggaccacagggag
caaataataggggaggaccaacgccccctggtggtgaggaaaggaaagaaactcaaagag
gaccacccaaagagggaggtccctcctgacgctcccatcatagatccaactatcaagttt
gagcaccagccgtggtacattaacgccacggggggaacactgcacccataccagctggaa
ggcctgaactggttgaggttctcctgggctcagggcacagacaccatcctggccgatgag
atgggcctcgggaagacggtgcagaccatcgtgttcctctactcgctctataaggagggt
cactctaaggggcccttcttggtgagcgctcccctctccactatcatcaactgggagagg
gaatttgagttgtgggctccggatttccacgtggtgacgtacaccggagacaaagacagc
cgggcaatcatcagggagaacgagttcacctttgaggacagcgcagtgaaatcaggacgc
aaggtgttccgcatgaagaaagacacgcccatcaagttccacgtgctgctgacttcctat
gagctgatcactatagatcaagccgttctgggctccatcacatgggcctgcctggtggta
gacgaggcccacaggctgaagaacaaccagtcaaagtttttcagaatcctcaacgggtac
aagatctactacaagctgctgctcactggaactcctcttcagaacaacttggaagagctg
ttccacctgcttaactttctcaccccagagcgcttcaataatctcgaaggcttcctggag
gagtttgcagacatctcgaaggaggaccagatcaaaaagctccacgacctgctcggccct
cacatgctcagaaggctcaaagccgatgtctttaagaacatgccttcaaagacagagctg
attgtcagagtggagctcagccccatgcagaagaaatattacaagtttattttgacgcgg
aactttgaggctctgaactccaaaggtggaggcaaccaagtgtccctgctcaacatcatg
atggacctgaagaagtgctgcaaccacccctacctgttcccagtggccgctgtggaagct
cccgtgttaccaaacggctcgtatgatggcaacatgctcgtgaagtcctcaggaaaactg
acgctgcttcagaaaatgctgaagaatctcaaagatgaaggacacagagttctcattttc
tctcagatgacaaagatgttggatctgcttgaagattttctggagttcgagggttataaa
tatgaacgtattgatggagggattactggaggcctcaggcaggaggccattgaccgcttc
aatgcaccgggcgctcagcagttctgcttcttgctttcaacacgagccggaggtcttggc
atcaacctggcgagcgccgacaccgtcgtcatctacgactccgactggaatcctcacaac
gacatccaagcttttagcagagcccatcgtatcggccagaacaggaaggtgatgatctac
cgctttgtgacgcggggctcagtggaggagcgaatcactcaggtggcgaagaggaagatg
atgctgacccacctggtggtgcggcccggccttggctccaaaaccggctccatgtccaaa
caggaactggacgatatcctcaagtttggcactgaagagcttttcaaagatgagatggag
gcagcgagagccatgggtgacactaaagaaagcgaggagggcaacgtgattcactatgac
gacaacgccatctccaagctgctggaccgcagccaggacgccaccgaagacacggagatc
cagaacatgaacgagtacctgagctccttcaaggtggctcagtatgtagtgaaggaagag
gacggagaggaggaggtggagcgggagatcatcaagcaggaggagaacgtggacccagac
tactgggagaagctgcttcgccaccactacgagcagcagcaggaggatctggcccgaaac
ctgggcaaaggcaaacgcatccgaaagcaggtcaactacaacgacacgacgcaggaggac
caagagtggcaggatgatctttcagacaatcagtcggagtactccgtggggtccgaggac
gaggacgaagatttcgaggagaggcccgaaggtggacgcagacagtctcgtcggcagatg
aagaatgagaaagacaaacccctgccacccttgctggcacgagttgggggcagtattgag
gtcctggggttcaacgcccgccagaggaaagccttcctcaatgccatcatgcgctgggga
atgcctccccaggatgctttcaactcccattggctggtccgagacctgcgagggaagagt
gagcgtgagttcagggcctatgtgtctctgttcatgagacacctatgtgagccgggggca
gacggagcagagacctttgctgatggagtcccacgtgagggactgtctcgtcagcatgtt
ctcaccaggatcggcgtcatgtctcttgtgaggaaaaaggtgcaagagtttgaacatgtt
aatggcaagctgagctccccagacctgattcccatcggcatggagctgaagaagctgact
gagagtttatcttctgaccccaacacccctgtaccggccagccctgtcgctacacagcca
ggcacacccatcccaccagagaagagtgagtttctcttgggtacccctgaagacaaggag
accacagagcaagatggcaagaaacggtcagagcaggaatcttccagtgcggagccagca
tccgtacctgagaagtcatctgacagtgaggagagcaaggccagctccgaggagaaaaca
gcagacgagagggacagaaccgaatcaccctctgcaaagaccgaaccatctgccaactca
aaagagtccgctttgaaacagacagaactgtcatccagtcaaacttcacctaaaatggag
ccctgcaaagacacagagaagtcctcagaaaaaggagatactgaatctcctctggcaaaa
actgaagacaaggaaaataaaccagctgtttcagatgatttgaagagtgaagatgcgtta
gagggtcgattaaatggagacaaagacactttggaggagatggatgagagcaggagggag
gacaaaaatggatacaaagccaagttcatgtttaatatcgctgatggaggttttacagag
ttgcacaccctctggcaaactgaagagcgagcggcgctgtcttccggaaagatgcacgac
atctggcaccgtcgccacgattactggcttttagccggcatcgtaacacacggctatgct
cgttggcaggacattcagaatgatccccgttatgctattctgaatgagcccttcaagacc
gagatacataagggcaactacctggagatgaagaacaagttcctggctcggcgcttcaag
ttgttggagcaggctctggtgattgaggagcagttgaggcgggcagcgtacctgaatatg
acccaggacccgagtcacccggccatggctctcaacactcgcttcgctgaggtggaatgt
ctggcagagtcccaccagcacctgtccaaagagtccctggccgggaacaaacctgccaat
gccgtgctgcacaaagtgctgaaccagctggaggaacttctgagtgacatgaaagctgac
gtgacacgactgcccaacatgctgtccaggatcccgccggtgtcggcccgtctgcagatg
tccgagaggagcatcctgagccgcctcaccagccgggggagcgagcctccgccgcagcag
ccttttagccagggggggttcggctgctcccagatgtacagcagcagcttcggtggagga
ttcagagggccgggtggtcagccgatggtcaactacagccagatgcctctgggcccctac
gtcagcgtgtcctctaacggccctccaccccctacaagccatctggacaagaagtcactt
gactccctgagagacgtggctacgcctgacctcaaatcaagcaaacctagtgatgtcatc
tgtattgaagactag
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integrated database retrieval system
