Anoplopoma fimbria (sablefish): 129106440
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Entry
129106440 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: DDB1- and CUL4-associated factor 1-like
KO
K11789
DDB1- and CUL4-associated factor 1 [EC:
2.7.11.1
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
afb01001
]
129106440
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129106440
Enzymes [BR:
afb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
129106440
Protein kinases [BR:
afb01001
]
Serine/threonine kinases: Other
Other
129106440
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
129106440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
WD40
EIF3I
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
LisH
Beta-prop_WDR19_1st
DUF948
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
129106440
NCBI-ProteinID:
XP_054473814
LinkDB
All DBs
Position
17:29927887..29952545
Genome browser
AA seq
1552 aa
AA seq
DB search
MSSPEEEASSAVSAALSSALSAAVSAAMAVAMSVDSKADLATLLDEWEETQQGTTEQLVS
ILTKISELIERETGEYHKADPDPFDDRHPGRADPDCMLGQLLKMLFMNDEFTNALMDTYI
MTSGELSLNTAACRLLQNIVPGLETAVVFQEKEGLVEKLFSWAREAVRPLSVFATGLLAR
AMSNQEVAASYREENAQLVPIMIQRLHELQTEEAKTPQNLPQDSQVEAAQTSRTEGEDMV
EEGERRERDGESSRTSSKTKALSRSAQKNGSTRLLPDFVYQTRPASSRETEERQEGDEGG
GGRRPAVTENGRKAKQKLEEERSSWSEMSSMVIGSDYQLSPLSPATEQRLILQYLTPLGD
YQELLAVFMQLDTRSLLMNYIDLRQTKNVQLIFDALLYLASLLLHKKFAAEFIAHGGVQK
LLRIPRPSMAATGVSLCLYYLAYNQDALERVCTLPDGVLSDVVSYALWLLESSHASGVCH
ATMFFSIAFSFRAVLQLFDQQDGLRRLVNLVSTLEILNTQSEVSIMSDDQVFANRQTAKH
TCMALRRYFEAQLAVKAEQVKQSLHTSDEGTIVPQQPFYKAYTYTREQVIEMMEFLSECG
PPQLYWEPVEVFYKLSCVPLMLQLISAACDWRTYYGRSDTVRYVLDILAMLVVVPKVQLV
LADTVEVQDETRSSVSTVGMSIILGVLEGEVFVNDAEIQKSALQVINNCVCAPDQSLNTV
GFAVAPLRPSLPPAAPRPHNRVLAHMWQLVQNNNGIKVLLSLLSVKMPITDADLIRALAC
KALVGLSRSSAIRQIISKLPLFTSSHIQQLMKEPVLQDKRSEHVRFCRYAAELTERVSGK
PLLMGSDVSLARLQRANVVAQSRITFSERELFMLIRNHLVAKGLHDTANTLVKEANLSVG
ALCPNSSSCITPPPLPSSSTSSTPMIPRTCRLAGGIAARVASHVGSSPLSSVASSSSRSL
VNPHPSCSSSSTTPLLPPPHPHPASQGSHPVGRILFTRERPAAHCNSGKKLRALKQKSDH
GAFIQTPAMKKQLERHLPLPPTLDSIITEYLREQHARCPNPVTTCPPFSLFTPHRCPEPK
QRRQASPNFTARLGSRVLYPKYGGVDRGCLDRHLIFSRFRPMSVFHEGDGDESGFTCCAF
SARERFLMLGTCSGHLKFYNVFSGEEEANYTCHSSAITHLEPSRDGKLLLTSASWSVPLS
ALWSMDGVFSLKNSFVNDHYVEFSKHCQDRVIGTEDQVAHIYDIQTGQKTVTLNDAALAN
NYKRNCATFNPTDDLVLNDGVLWDVRASRAIHKFDKFNMNISGVFHPNGLEVIVNTEVWD
LRTFHLLHTVPALDQCRLVFNSNATIMYGAMLQADDEDDAMDQQMKSPFGSSFRTFDATD
YKPIATVDVKRNIFDLCTDTKDCYLAVIENQDTVSLDTVCRLYEVGRHKLAEEGDDDDQD
EEDQDDDDSSDSDDDDDDDDDEDMDTDPLIRELANNSDPENEEGPHTPTDEEIADLLGSN
SDGDGDGDDSVDSDQTFRTDNRSDSSDFENYLPQQSDDESRLLQDLSDGWSS
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccccagaagaagaagcgtcctctgccgtgtcggctgctctgtcctctgcgctg
tcggcggccgtgtcggctgccatggcggttgccatgtcggtggactcgaaggccgacctc
gccacgctcctcgacgaatgggaggagacgcagcagggaaccacggagcagctggtgtcc
attctcactaagatctctgagctgattgaacgtgaaacaggagaatatcacaaagcggat
cctgatccctttgatgaccgtcatccaggacgagcagacccagactgcatgctgggacaa
ctcctgaagatgctcttcatgaatgacgaattcactaatgcgctgatggacacgtacatc
atgaccagcggggagctgagcctcaacacggccgcctgtcggctgctgcagaacatcgtg
ccgggtctggagaccgccgtcgtcttccaggagaaggaaggtctggtggagaagttgttc
agctgggcccgcgaggcggtgcgaccgctgagcgtcttcgccacggggctgctggccaga
gccatgagcaaccaggaagtggcggccagctacagagaggagaacgctcagctggtgccg
atcatgattcaacgcctgcatgagctgcagaccgaagaggccaagacgcctcagaatcta
cctcaggactctcaggtcgaagctgcccaaacctcccggacagagggggaggacatggtg
gaggagggggagaggagagagagagacggagagagcagcaggacatcgtcaaaaaccaaa
gctttgtctcgttcggcccagaaaaacggctcgacgcgacttctcccggactttgtttac
cagacgaggccggcctcctccagggagacggaggagaggcaggagggagacgaaggggga
ggagggaggagaccggcggtgacggagaacgggaggaaggccaagcagaaactggaggag
gagagaagctcctggtcggagatgagctccatggtgatcggctccgactaccagctgtcc
cctctgagcccggccacggagcagaggctcatcctgcagtacctgacgccgctcggagat
taccaggagctgctcgccgtcttcatgcagctggacacccgctcactgctgatgaactac
atcgacctcaggcagaccaagaatgtccagctcatctttgacgccctcctgtatctggcc
tcgttgctcctccataagaagtttgcagcagagttcatcgctcacggaggagtccagaag
ctcctcaggatcccgaggccttcgatggcggcgaccggagtctcactctgcctgtattac
ctggcgtacaatcaggacgctttggagagggtgtgcacgctgccggacggcgtgctgtct
gacgtggtgtcctacgctctctggctgctggagtcgtcccacgcgtcgggcgtctgccac
gccaccatgttcttctccatcgccttctccttcagagccgtgctgcagctcttcgaccag
caggacggcctgcgacggctggtcaacctggtcagcactttggagatcctgaacacacag
agcgaggtgtccataatgagcgatgaccaggtctttgccaaccgacagacggccaaacac
acctgtatggccctgcgcagatactttgaggctcagctggcagtgaaggccgaacaggtg
aaacagtctctgcacacgtcggacgaaggaaccatcgttccacagcagccgttttataag
gcgtacacgtacaccagagagcaggtgatcgagatgatggagttcctcagcgagtgtgga
cctcctcagctttactgggaaccagtagaagttttctacaaactgtcctgcgtcccttta
atgctgcagctcatatcggccgcctgtgactggaggacctactacggcaggagtgacacg
gtgcgttatgtcttggacatcctggccatgctggtggtggtgcctaaggtccagttggtg
ctggcggacactgtggaggttcaggatgaaaccaggtcgtccgtctccaccgtgggtatg
agcatcattctgggcgtcctggagggcgaggtgtttgtcaatgacgccgagatccagaag
tctgcactacaagtgatcaataactgtgtgtgcgctccggaccagagcctgaacactgtg
ggttttgctgtggcccccctccggccgtcgctgcccccagcagccccccgcccccacaac
agagtgctggcccacatgtggcaactggtgcagaacaacaacggtataaaggtgcttctg
tccctgctgtcggtgaagatgcccatcacggatgcagacctgatccgagctctggcctgt
aaggctctggtcggactctctcgaagctcagcgatcagacagatcatcagcaaactgccg
ctcttcaccagcagccacattcaacagctgatgaaggaaccggttcttcaggacaaacgg
agcgagcacgtccgtttctgccggtacgccgccgagctgacggagcgggtgtcggggaag
cccctcctcatgggctccgacgtctcattggctcgtctgcagagggccaacgtggtcgcc
caatcacgcatcaccttctccgagagggagctcttcatgctgatcaggaaccacctggtg
gccaaaggcctccacgacacggccaacacgctcgttaaagaggccaatttatccgttgga
gccctctgtccgaactcctcctcctgtatcacccctcctcctctcccctcctcctccacc
tcctccaccccaatgattcccaggacttgccggttagccggtgggatcgccgctcgcgtc
gccagccatgttggctcgtctcctctgtcctcggttgcctcctcttcctctcgctccctc
gtcaatcctcacccctcgtgctcctcttcgtccacaacccccctccttcctcctcctcat
cctcatccagcgtctcagggatcacatccggttggtcggattttgttcactcgtgaacgt
ccggcggctcattgcaactcaggaaaaaagctccgggcgctgaaacagaagtctgaccac
ggtgctttcatacagactccggccatgaagaagcagctggagcgccacctccccctcccc
ccgaccctcgacagcatcatcaccgagtacctgagggagcagcacgcccgctgcccgaac
cccgtcaccacctgcccccccttctccctgttcaccccccaccgctgccccgagcccaag
cagaggaggcaggcctcgcccaacttcaccgcccgcctgggcagccgggttctgtacccg
aagtacggaggcgtggaccgaggctgcctggaccgacacctgatattcagcaggtttcgt
ccgatgtcggtcttccacgagggcgacggagacgagagcggtttcacctgctgtgccttt
tcggcccgcgagcgtttcctgatgctgggaacctgctcgggtcacctcaagttctacaat
gtcttctccggagaggaggaggccaactacacctgccactcttcagccatcactcacctc
gaaccctccagggatgggaagctgctgctcacctctgcttcctggagcgtccccttatct
gccctctggagcatggacggtgtcttcagcttgaagaactcgtttgtaaacgaccactac
gtggagttcagtaaacactgtcaggacagagtcatcggcaccgaggaccaagtcgcacac
atctacgacatccagacgggtcagaagacggtgaccctgaacgacgccgccctggccaac
aactacaagaggaactgtgccaccttcaacccgacggacgacctggtgctgaacgacggc
gtgctgtgggacgttcgggcgtcgcgggccatccacaagttcgacaagttcaacatgaac
atcagcggcgttttccacccgaacggcctggaggtcatcgtcaacacggaggtctgggac
ctgaggaccttccacctcctgcacactgtcccagctctggaccagtgcagactggtcttc
aacagcaacgccaccatcatgtatggagccatgctgcaggccgatgatgaggacgacgcc
atggaccagcagatgaagagtcccttcggctcgtccttcagaaccttcgatgctacggac
tacaagcccattgccaccgtggacgtaaagaggaacatctttgacctttgcaccgacacc
aaagactgctacctggctgtcattgagaaccaggacacggtgagcttggacactgtttgt
cgtctgtacgaggtcgggagacacaaactggcagaagagggagacgacgatgatcaggac
gaggaggaccaggacgatgatgactcctcagacagtgatgatgatgatgacgatgacgat
gatgaagatatggacacagacccgctgatacgggaactggccaataacagcgacccggaa
aacgaggagggaccacatactcctacagacgaggagattgcagatcttctgggcagtaac
agtgacggtgacggtgacggtgacgactccgtggactcggatcaaacattcagaactgat
aacagatcagactcctctgacttcgaaaactacttaccacaacagtcagatgatgagagt
cggctccttcaggacctcagtgacggttggtcctcctga
DBGET
integrated database retrieval system
