Anoplopoma fimbria (sablefish): 129106741
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Entry
129106741 CDS
T09102
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129106741 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129106741 (hbs1l)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129106741 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
GTP_EFTU_D4
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
129106741
NCBI-ProteinID:
XP_054473928
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Position
18:7716855..7738140
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AA seq
699 aa
AA seq
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MSRHRNVRGYNYDEDLDDDDVYGQSVDDDYCCISPATANQFIYSRQEGQAPKGDPLEEEE
FEEDVPMSPTISHNLDPLDQAKLYSCLDHMRTVLGDAVPDSVLTQAAIRCGFDPQKALDA
VLSEDAKTAPVTKMTSEETASIARVGQEKAPLPQRIKKEAVAEKAKSRDVSHNELDSEVV
PKVARMTVSGKKQTMGFDVPSTGENGVVTASPRRGGSSENTSTTSEASSKRPETPSKGSN
GEEPSTVPTPGRSSGKARQSINIKAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHLLYLL
GNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMD
APGHRDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVA
VNKMDQVNWQQERFKGITSKLGHFLKQAGFKESDVFYIPTSGLSGENLTSRSSVSELTSW
YSGHSLLEQIDAFKAPQRSVDKPFRLCVSDVFKDQGSGFCVTGKIESGYIQPGERILAMP
PNETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRACTRFRAR
ILLFNIEVPITQGFPVLLHYQTVSEPATIRKLISVLHKSSGEVLKKKPKCLSKGMNAIVE
IQTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIK
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggcaccgaaacgtgcgaggttacaactacgacgaagatcttgacgacgatgac
gtatatggacagtctgtggatgatgactactgctgtatatcaccagcaacagcaaatcag
ttcatctactctcgtcaagaggggcaagcaccaaagggggatcctttagaagaggaagaa
tttgaggaagatgtacccatgtcccctaccatcagccacaaccttgaccctctcgaccaa
gccaagctgtattcctgtctggaccatatgcgtactgtactgggagatgcagtgccagac
tcagtcctgacccaggcagccataagatgtggattcgacccacagaaggcactggatgcc
gtcctgtctgaagacgccaagacagccccagttaccaaaatgaccagtgaagagacggct
tcgatagcaagagttggccaggagaaagcgccgcttccacaaagaatcaaaaaagaggcc
gttgctgagaaagctaaaagcagagatgtgtctcacaatgaactggactctgaagtggta
cccaaagtggcccgcatgaccgtctctggcaagaagcagaccatgggctttgatgttccc
agtacaggggaaaacggcgttgtcactgcttcgccacgccgtggaggcagctctgaaaac
acctccacaacctcagaggcctcatccaagcgtcccgagactccatctaaagggtcgaat
ggagaagaaccctccacggttcccaccccgggccgctcctctggaaaggcccggcagtcg
atcaatatcaaagctgaactggagaagaggcaggggggcaaaccgctgttaaatttggtg
gttataggtcatgtggatgcgggtaaaagcacactgatgggccacctgctttatctgctg
ggcaacgtgaacaagcgcaccatgcacaagtatgagcaggaatcaaagaaggcagggaaa
gcctccttcgcctatgcttgggtcctagacgaaactggcgaggagagggacaggggtgtg
acgatggatgttggcatgacgaagtttgagacaaactctaaggtggtgaccttaatggat
gcaccaggacacagagacttcatccccaacatgatcactggagctgcacaggccgacgtg
gcggtgctcgtggtggatgccagccgaggagagtttgaggcaggctttgaggcggggggt
cagaccagagagcatgccctgttggtgcgttcgctgggcgtcactcagctggctgtagct
gtcaacaagatggaccaggtaaactggcaacaagaacgtttcaaaggcattacttccaag
cttggccattttctcaaacaggcaggattcaaggagtctgatgttttctacatccccacc
agcggcctctcaggagagaacctaaccagcaggagttcagtgtcagagcttacctcttgg
tactctggtcacagcctgctggagcagatagacgccttcaaagctcctcagagatctgtt
gacaaaccgttcagactgtgcgtctccgatgtgttcaaagaccagggttcaggcttctgt
gtcacaggaaagattgagtctggttacattcagcccggagagagaatactggcaatgcct
cccaatgaaacctgcactgtcaaaggtattactctccacgatgaggctctggactgggct
gcagcaggagaccacgtcagcctgacggtcaccggcatggacatcatcaagatcaatgtg
ggctgtgtgttctgtgatcccaaggagcctattcgagcctgtactcgattcagagcccgg
atccttctcttcaatattgaggtccccatcacacaaggcttcccagtattgctgcattac
caaacagtaagtgagccagccaccattaggaaactgatcagcgttctacacaagagcagc
ggggaggtcctcaagaagaagccaaagtgtttgagtaaaggtatgaatgccatcgtggag
atccagacccagaggcccgtgtcattagagctctacaaagactacaaagagctgggccgc
ttcatgctcagatatgtcggctccaccatcgctgcaggggtcgtcactgagatcaaatga
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