Anoplopoma fimbria (sablefish): 129106751
Help
Entry
129106751 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: neurexin-3b-like
KO
K07377
neurexin
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
129106751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129106751
Membrane trafficking [BR:
afb04131
]
Exocytosis
Calcium ion-dependent exocytosis
Others
129106751
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_G_3
EGF
ConA_2nd_BAM2
Syndecan
Motif
Other DBs
NCBI-GeneID:
129106751
NCBI-ProteinID:
XP_054473940
LinkDB
All DBs
Position
18:19550238..19820270
Genome browser
AA seq
1709 aa
AA seq
DB search
MNPNSLPAHVLLLLSTMLGLSVGLEFTGSEGQWARYLRWDASSKSDLTFQFKTSESEGLL
LYFDDGGFCDFLLLTVSKGKLQLRVSIDCAETTITSDKMVNDSRLHFAAINRHNLRTGLA
VDDQTKTEEVRPQRRFMRIVSDLFLGGLPGDIRTSTITLPSVRELPPFKGIITELSYGSK
KPTLINSQKVRLEMMGLCTENPCENDGICSLADGEPYCDCSKTGYVGRYCTEAVQRKPGL
AHLKAEQGRNKGREENVATFRGSEYFCYDLSQNPIQSSSDEITLSFKTWQRNGLLLHTGK
SADYVNLALKDGAVSLVINLGSGAFEAIVEPVNGKFNDNNWHDIKVTRNLRQQSGIGHAM
VTISVDGILTTTGYTQEDYTMLGSDDFFYVGGSPSTADLPGSPVSNNFMGCLREVVYKNN
DIRLELSRLARIVDPKMKLQGDVVFKCENVPTLDPINFETPDSYLALPKWNTKRVGSISF
DFRTSEPNGLILFTHGKPQDRRDAKGQKNNKVDFFAVELLDGGLYLLLDMGSGTIKVKAT
QAKVNDGAWHHVDIQRDGRSGIISVNSRRSPFTASGENEILDLEGDLYLGGLPDSRAGLV
LPTELWTAMLNYGYVGCVRDLFIDGRSKDIRQIAQSQNVTGIKSSCSKVTGKQCDSSPCK
NNGACKEGWNRFVCDCTGTGFWDSTCEREASILSYDGSMYMKVVIPNVMHTEAEDVSLRF
MSQRAFGLLMAATSRESADTLRLELDSGRVKLTVNLDCVRINCNTSKGPEVIYAGQKLND
NEWHSVRVVRRGKIFKLTVDEDMAEGEMAGDHTRLEFNNVETGILTERRFVSSAPSSFIG
HLQSLKFNGMQYIDMCKNGDIDFCELNARFGMRFIIADPVTFKTKGSYLGLATLQAYTTM
HLFFQFKTTSPDGFIIFNSGDGNDFIAVELVKGFIHYVFDLGNGPSLLKGNSDNPLNDNQ
WHNVVVTRDASNTHTLKVDSKSVTQNVNGAKNLDLKGDLFVGGLGPNMYQNLPKLVVSRE
GFQGCLASVDLNGRLPDLINDALFRSGQIDRSCEVGFTKADLQGPSTTCQEDSCANMGVC
IQQWENFTCDCSMTSYSGTHCNDPGTTYIFGKGGGLITYTWPNNERPSTRTDRLAVGFST
TIKDGILVRIDSAPRLGDYIMLHIEQGKVGVTFNIGTVDISVKETTTGINDGKYHLVRFT
RNGGNATLQVDNWPVNEHFPTGNSDIERYQMANKKIPFKYTRPVEDWLQEKGRQLTIFNT
QATISIGGNDRKRPYQGQLSGLYYNGLKVLNMAAEGHVNIKVNGSVRLVGDVPVSRGAAR
TTTSVPPEMSTTFIETTTTLSTTTTRKQRSPPIIQTTDDIVSSAECSSDDEDLEECDSGH
AGGELVIPVLVEDPIDIPSVSTRSPFIPLPQPXPPVLTIVETTKESLAMATEAGVPCLSD
RGGDDCDDGDGGDDGDDDDDDGMVISGFGSGEAFDSSLPPTDDEDFYTTFSLVTDKILTT
SAYEGGYKALAPKWEAKDLRPSKASEAGRTTPSSPLPNPRGTPPAAVPSDTPPKLPAGKM
NNREVKPPQPDIVLLPLPTSFELDGTKPRGPFITSPMLRTVPAALPTVPGVVRRVPPGAS
EVIRESSSTTGMVVGIVSAAALCILILLYAMYKYRNRDEGSYQVDETRNYISNSAQTNGA
VVKDKTPSGSTKGSASSKRPKDKDKEYYV
NT seq
5130 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccaacagcctacctgctcatgtcctcttgctgctgagtaccatgctgggcctg
agcgtaggcttggagtttactggctctgaaggtcagtgggctcgctacctgcgctgggat
gccagctccaaaagtgacctgacttttcagttcaagacttcagaatcggagggcctgctg
ctctacttcgacgacggcggcttttgcgactttctgcttctcacagtatccaagggtaag
ctgcagcttcgcgtcagcatcgactgtgctgagaccaccatcacctctgacaagatggtc
aacgacagccgcttgcactttgccgccatcaacaggcacaatttgcggactggcttggcc
gtggatgaccagaccaagaccgaggaagtgcggccccagaggcggtttatgaggatcgtt
agtgacctcttcctcggagggctccccggggacatccgcacatctaccatcaccctgccc
tctgtccgtgagctaccaccattcaagggaattatcacagagctcagttatgggagtaag
aaacccacgctcatcaatagtcagaaagtacgcttggagatgatgggcctttgcacagag
aacccctgtgagaatgacgggatctgctcactggcagatggagaaccctactgtgactgc
tccaaaactggatatgtaggtcgatactgcactgaagcagtccagagaaaaccaggcctc
gcacacctgaaggcagagcaaggtagaaacaaagggagggaggagaacgtggcaaccttc
cggggctcggagtatttttgctacgacctgtcgcagaaccccattcagagcagcagcgac
gagatcacgctgtccttcaagacctggcaacgtaacggcctcctcctccacacggggaaa
tccgcagactatgtcaacctggccctaaaagacggggccgtctccctggtcatcaacctg
ggctccggtgcctttgaggccatcgttgagccagtcaatggaaagttcaacgacaacaac
tggcatgacatcaaagtgacgcgcaacctgagacagcaatcaggcattggacacgctatg
gtgactatctccgttgatgggatcctcaccaccactggctacacgcaggaagactacacc
atgctgggctccgatgatttcttctacgtgggtgggagccccagcactgcggacctgccc
ggatctccagttagcaacaatttcatgggctgcctcagagaggtggtgtataagaacaat
gatatccggctggagctgtcccgcctcgcccgcattgtggaccccaagatgaaactccag
ggcgatgtggtctttaagtgcgaaaacgttcccaccctcgaccccattaactttgagacg
ccagattcctacctggccttaccgaagtggaacaccaaacgcgtcggctccatctcgttt
gatttccgcacctccgaacccaacgggttgatactcttcacccacggcaagccgcaggac
cgcagggatgcgaagggacagaagaacaacaaggtagacttctttgcggtggagctgctg
gacggagggctgtacctgctgcttgacatgggctccgggaccatcaaggtcaaggccaca
caggctaaggtcaatgacggcgcctggcaccatgtggacatccagagggacggtcgctca
ggcatcatctcagtaaacagccgccgatcccctttcacagccagcggggaaaatgagatc
ttggacctggagggggatctttatctaggtggtctacctgacagccgggcaggcctggtg
ctccccactgagctctggaccgctatgctgaactacggctatgtgggctgtgtccgggat
ctgttcatcgacggacgcagcaaggacatccggcagatagctcagtcccagaatgtgacc
ggcatcaagtcctcgtgcagtaaggtgacgggaaaacagtgcgacagcagcccctgcaag
aacaacggcgcatgcaaggaaggatggaaccgcttcgtctgtgactgcactggaaccggc
ttctgggatagcacctgtgagagagaggcatccattctgtcatacgatggcagcatgtac
atgaaagtggtgattccgaacgtcatgcacacagaggctgaggacgtctccttgcgcttc
atgtcccagcgggcattcggcctgctcatggccgccacgtcccgcgagtcggcggatacg
ctgaggctggagctggacagcggcagagtcaaattgacggtcaacctagactgtgtcagg
ataaactgtaacaccagcaagggccctgaggttatttatgccggacaaaagctcaacgac
aatgagtggcactcagtacgagtggtccgccgcggtaaaatcttcaaactcactgtggac
gaagacatggctgaaggtgagatggcgggcgaccacacccgtctagagttcaacaacgtg
gagacgggcatcttgaccgagaggcgctttgtctcgtctgctccctcctcctttataggg
catcttcagagcctgaagttcaacgggatgcagtacatcgacatgtgcaagaacggggac
atcgacttctgcgaattgaacgcccgctttggaatgcgtttcatcatagctgaccccgtg
accttcaagaccaagggcagctacctgggcttggccactctgcaggcttataccacaatg
cacctcttctttcagttcaaaaccacctcgcctgacggtttcatcatcttcaacagcgga
gacgggaacgacttcatcgctgtagagctggtcaaagggtttatccactatgtgttcgac
ctggggaacgggcccagtctgttgaaggggaacagtgacaaccccctgaacgataaccag
tggcacaacgtggtcgtcacgagagacgcctccaacacgcacacgctcaaggtggactcc
aagtcagtcacccagaatgtcaacggagccaagaacctggacctcaaaggtgacctgttt
gtcggaggtctgggacccaacatgtaccagaacctccctaagctggtggtttctcgggag
ggcttccaaggctgcttggcctcagttgatctcaacggccgcctgccagatctcatcaac
gacgcccttttccgcagtgggcagattgatcgaagctgtgaagttggtttcaccaaagcc
gacctgcaaggccccagcacgacctgccaggaggactcgtgtgccaacatgggtgtgtgt
atccagcagtgggagaacttcacttgtgactgctccatgacgtcttactcgggaactcac
tgcaacgaccctggcaccacctatatctttggtaaaggagggggtctgatcacatacacg
tggcccaataacgagaggccaagcacacggacggaccggctggcagtgggcttcagcacc
actatcaaagacggcatcctggtccgcatcgacagtgcccctcgtctgggtgactacatc
atgctgcacatcgaacaaggcaaagtgggtgtgacattcaacattgggaccgtggacatc
agcgttaaggagacaaccaccgggataaacgatggcaaataccatttggtccggttcacc
aggaacgggggtaacgccaccttgcaggtggacaactggccagtcaatgaacacttccct
acaggcaacagcgacattgagcgctatcaaatggcaaataagaaaatcccgttcaaatat
acccggccagtagaagattggcttcaggagaaaggccggcagctgaccattttcaacacc
caggccactatctccattggcggaaacgaccggaagcggccctaccagggccagctgtcc
ggcctctactacaacggcctcaaggtcctcaacatggccgccgagggccacgtcaacatc
aaggtgaacggcagtgtgcggctggtgggcgacgtgccggtcagcaggggcgcggcgcgc
accaccacctcagtgccgccggagatgtccaccacctttattgagaccaccaccacgctc
tccacgacgaccacccgcaaacagcgctcaccgccaattattcagacgacggatgacatc
gtttcatcggcggagtgctccagcgacgacgaggacctggaagagtgcgactcgggacat
gcaggaggggagctagtcatccccgtgctagtcgaggaccccatagacatcccctctgta
tccacccgttctccattcatccccctcccccaacccnntccgcccgtcctcaccattgtt
gagaccaccaaagaatccttggccatggccactgaggcgggggtaccttgcttgtcggac
cgaggcggcgatgattgtgatgatggtgatggtggtgatgatggtgatgatgatgatgat
gatggcatggtgatttcggggtttggctctggcgaagctttcgactctagcctgcccccg
actgacgatgaagatttttacaccaccttctccctggtaacagataagatcttgaccaca
tcggcctatgaaggcggctacaaagccctcgcgcccaagtgggaggccaaggacttgagg
cctagcaaagcctctgaggcaggtaggactacaccctcctcgcctctgcccaacccccgg
ggcacgccgccggcggcggtcccctcggacacgccacccaagctgcccgccgggaaaatg
aacaaccgcgaggtaaagcccccgcagccggacatagtcctgctgcccctgcccacgtcc
ttcgaactggacggcaccaagccacggggccctttcatcacctcgcccatgctgcgcacg
gtgcctgccgccttgcccacagtgcctggtgtggtgcggcgggtgcccccgggggcctca
gaggtaatccgggaatccagcagtaccacgggcatggtggtgggcattgtctcagctgcc
gccctctgcatcctcatcctcctctacgccatgtacaagtataggaacagggacgagggc
tcctaccaggtggacgagacgcgcaactacatcagcaactcggcgcaaaccaatggcgct
gtggtgaaggataaaacgcctagcggcagcaccaaaggcagcgccagtagcaagagaccg
aaagacaaggacaaggaatattatgtatag
DBGET
integrated database retrieval system
