Anoplopoma fimbria (sablefish): 129106842
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Entry
129106842 CDS
T09102
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb00100
Steroid biosynthesis
afb01100
Metabolic pathways
Module
afb_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
129106842 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
afb01006
]
129106842 (fdft1)
Enzymes [BR:
afb01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
129106842 (fdft1)
Prenyltransferases [BR:
afb01006
]
Terpene biosynthesis
Squalene/phytoene synthase
129106842 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
129106842
NCBI-ProteinID:
XP_054474067
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All DBs
Position
18:8990099..8996814
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AA seq
526 aa
AA seq
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MGGGGRSQVIITADPQTVCRDPAALRSKVRGALDLALPGVCLFSPHSTPSARLSSRLHVS
NSPPCQVIRMAGACCKCPVSLSVLKRSLSVAPRGCGSAPRSLPLGWRLGERGLQEAARPS
SALRPAGFYRHTGFLCLPYQESMSESLRTCYLYLNQTSRSFAAVIQALDGELRHAVCIFY
LVLRALDTVEDDMTIPLDKKVPMLNDFHTFLYQDEWCFTESQEKDRQVLADFPTISLEFR
NLAQEYRDVISDICHRMGEGMAEFLEKKVGSMKEWDLYCHYVAGLVGIGLSQLFSASQLE
DAEVGRDTELANSMGLFLQKTNIIRDYLEDTQQGRAFWPQEAWSQFAGRLEDLAQPEKLE
SALSCLNLLITDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSSCYNNPKVFQGV
VKIRKGQAVTLMMEATNMTAVQTIISQYSHEILKKVSHTDPTRDKTLHILALIEEKSALL
QSSLPSRTHHLSPMYLSAAMLLAALSWQYLSTTAAQAQGTGDMQGQ
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaggtgggaggagccaagtaatcataacagcagatccacaaacggtgtgcaga
gaccccgctgcactgcgcagtaaggtcagaggagcgcttgatttagctctcccaggcgtg
tgtttgttttctccccactcgaccccctcagctcgcttgtcctctaggctgcatgtttca
aactcccccccctgtcaggttattcgtatggccggagcttgttgcaagtgtccagtctcg
ttgtccgtgctcaagcgctctctctcggttgcaccgcggggctgtgggtccgctcctcgg
tccctccctctgggctggaggttaggtgagcggggcctgcaggaggccgcccgaccctcc
agcgccctcagacctgcagggttttaccgacacactggcttcctctgtctcccctaccag
gagtccatgagcgagagtctgcggacctgctacctgtacctgaaccagaccagccggagc
tttgcagctgtgatccaggcgctggacggggagttgagacatgcagtctgtattttctac
ctggtgctgcgagcgctggacacagtggaggacgacatgaccatccctctggacaagaag
gttcccatgctgaatgactttcacaccttcttgtaccaggatgagtggtgcttcacagag
agccaggagaaagaccgacaggttctggctgattttcccacgatatcactggaattcaga
aacctcgctcaagaatacagagatgtcatctcagatatctgccaccgtatgggagaagga
atggccgaattcctggaaaagaaagtgggatccatgaaggagtgggacctgtattgccat
tacgtggccgggctggtcggcatcggtttgtctcagctgttctctgcgtcccagctggag
gacgccgaggtcgggcgtgacaccgagctggccaactccatgggcctgttcctccagaag
acaaacatcatccgggactatctagaggacacgcaacagggacgtgccttctggccacaa
gaggcttggagtcagtttgcaggtcgcctggaggacttggcccagccggagaagctagag
tcggctctctcctgcctcaacctgctgatcactgatgctctgcgacacgttccggatgtc
atcgcctacctgtcccgcctgcgcaaccagagcgtcttcaatttctgtgccattccacag
gtgatggcaatagctacactgtcgtcatgctacaacaaccccaaggtgttccagggagtg
gtgaagatcagaaagggacaggctgtcacactcatgatggaagccaccaacatgacggcc
gtgcagaccatcatctcccagtacagccatgagatcttaaagaaggtctctcacacggac
ccgacgcgggacaaaaccctgcacatcctggctctgatcgaagagaagtccgccctgttg
cagtccagcctcccctccaggacccaccacctgtcgcccatgtacctgtccgccgccatg
ctgctcgccgccctcagctggcagtacctcagcaccactgcagcacaggcacaaggcacg
ggggacatgcagggacagtga
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