Anoplopoma fimbria (sablefish): 129106918
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Entry
129106918 CDS
T09102
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129106918 (ddx1)
03016 Transfer RNA biogenesis [BR:
afb03016
]
129106918 (ddx1)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129106918 (ddx1)
Spliceosome [BR:
afb03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129106918 (ddx1)
Transfer RNA biogenesis [BR:
afb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129106918 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
129106918
NCBI-ProteinID:
XP_054474172
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All DBs
Position
18:complement(7251221..7258223)
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEELDWLLPTDIQAESVPLILGGGDVLMAAETGSGKTGAFSIPV
IQVVYETLKDQQEGKKGRASVKTGGAIFNNWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYYYEVTCHDQGLCRIGWSTSLAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQMSFSKNGNDLGVAFEIPQPVQSQPFFASCVLKNAELKF
NFGGEAFKNAPKTGFVTLDQAPEGHTVKSSQAGSAKVSQAKVSSNAPKALILEPSKELAE
QTLNNVKQCSKYVDNPKLRTLLVIGGVAAKDQLAALEQGIDIVVGTPGRLDDLISTGKLS
LAQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKNDRLWERVGKNHIRTDEVHSKDNTRPGAN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYLIQQGGGPDSKGHQL
SCVCLHGDRKPIERKTNLERFKKKEVKLLVCTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAMEKEKVWYHVCANRGRGCYNTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPLDDFDGKVTYGQRKALGGGNYKGHVDALAPTVQELAILER
EAQSSFLHLGYMPNQLFRAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttttctgaaatgggggttatgcctgaaatcgcgcaggctgtggaggagctg
gactggctgctacccactgacatccaggcagagtctgttccccttattcttggaggagga
gatgtacttatggcagcagaaactggcagcggtaaaacaggggccttcagtatcccagtg
atccaggtcgtgtatgaaaccctgaaggatcagcaggagggcaagaagggcagagcctca
gtgaagactggaggagctattttcaacaattggcagatgaatccttacgaccgcagtcca
gcttttgcgattggtccagatggactgtgctgccagagcagggagtttaaagagtggcat
ggctgtcgctctacaaaaggggtcaccaaagggaagtactactatgaggtgacctgccat
gaccagggtttgtgtcgcattggctggtccaccagtctggcagccctggacttgggaact
gataagtatggttttggttttggtgggactggaaaaaaatccaacaacaagcagtttgac
agctacggagaggagttcaccatgcatgacactattggatgctacttggaccttgacaag
ggccagatgtccttctctaaaaacggcaatgacctgggtgtggcttttgagatccctcaa
cccgtgcagagtcagcccttctttgcctcctgtgtgctcaagaatgcagagctgaagttc
aactttggaggagaagcctttaagaatgcccctaagaccgggtttgtcaccttggaccag
gcgccagaaggccacacagtcaaatcttctcaagcaggcagtgccaaagtgagtcaggct
aaagtatcatccaacgcacccaaagccctgatcctggagccatctaaagaactggcagaa
caaaccctcaacaatgtcaagcagtgttcgaaatatgtggataaccccaaactcaggacc
ctgctggtgattggtggcgtggctgccaaagaccagctggctgctctggaacaggggatt
gacattgtggtgggaacaccaggaagactggacgacctcatatctaccgggaagctcagt
ctggcccaagtccgctttctagtcctggatgagtgtgacggcttactgtctgcaggctat
acagactttatcaacaggatccataaccagatccctcaggtcacttctgacggcaaaaga
ctgcaggtgattgtttgttcggccacgctgcattcgtttgacgtgaagaagctgtccgag
cggatcatgcactttcccacttgggtggacctgaagggggaggactctgtccccgagagc
gtccaccacgtggtggtgcctgtaaatccgaagaacgatcggctttgggagcgcgtcggc
aagaaccacatccggaccgatgaagtccattccaaagataacaccagaccaggagccaat
tctgcagaaatgtggtcagaagcgatcaaagtgctgaagggcgagtacacagtgagggcc
atcaaagagcacaagatggaccaggccatcatcttctgccgcaccaagattgactgcgac
aacatggaacagtacttaattcagcagggaggaggtccagacagtaaaggtcaccagctc
tcctgtgtctgtctccatggtgatcgtaagccaatagagaggaaaactaacctggagcgc
ttcaagaaaaaagaagtgaagctcttggtctgcacagacgtagctgccagaggaattgac
gtccacggagttccttatgtgattaacgtcaccctgccagacgagaagcagaactacgtc
caccgtatcggcagagttggaagagcagagagaatggggctggccatctccttggttgcc
atggagaaagagaaggtgtggtaccacgtttgcgcgaaccgaggcagaggctgctacaac
acccggctgaaggaggatggaggttgcaccatctggtacaacgagaaagagctcctgtca
gatattgaagagcatctaaagtgcaccatcacccagtgtgagccagacatcaaagtaccc
ttggatgactttgatggaaaggtcacctatggtcagcgcaaggctttgggaggtggtaac
tacaagggccacgtggatgctctggccccgacggtccaggagctggcaatcctcgagaga
gaagcccaatcttccttcctccacctgggttacatgccaaaccagcttttcagagccttc
tga
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