Anoplopoma fimbria (sablefish): 129106926
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Entry
129106926 CDS
T09102
Symbol
xrn2
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03008
Ribosome biogenesis in eukaryotes
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
129106926 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
129106926 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
afb03021
]
129106926 (xrn2)
03019 Messenger RNA biogenesis [BR:
afb03019
]
129106926 (xrn2)
03009 Ribosome biogenesis [BR:
afb03009
]
129106926 (xrn2)
03016 Transfer RNA biogenesis [BR:
afb03016
]
129106926 (xrn2)
Transcription machinery [BR:
afb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129106926 (xrn2)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
129106926 (xrn2)
Ribosome biogenesis [BR:
afb03009
]
Eukaryotic type
Pre-60S particles
RNases
129106926 (xrn2)
Transfer RNA biogenesis [BR:
afb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
129106926 (xrn2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
DUF8363
SLU7_N
Motif
Other DBs
NCBI-GeneID:
129106926
NCBI-ProteinID:
XP_054474183
LinkDB
All DBs
Position
18:2046386..2085126
Genome browser
AA seq
982 aa
AA seq
DB search
MGVPAFFRWLSRKYASIIVHCVEEKGKECNGVRIPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKAAPKNEDEMMVAIFEYIDRLYNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTEEKDRIREEIIGKGGYLPPDEIKERFDHNCITPGTEFMDNLAQCLRYYVAD
RLSNDPGWKNVTVFLSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQVGHELKDCQGAPREKQGQHDEFADSMPVSEQE
FIFIRLCVLREYLARELTMSSLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTENGYVNLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKD
KRKRMKAEQRGPAYLTGGQFAPQALGRRDRPEAVQNARHQAFDMRMQHNKDAAQFLKASI
KNGGNSSAGSSGGADNRGVKRKAEDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDATDDD
FRKRVVRSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKEMFTDFEKDTKPFK
PLEQLMGVFPAASGNFLPTTWRSLMSSPESSIIDFYPDDFAIDLNGKKYAWQGVALLPFV
DERRLRAALEDVYPDLSPEEVRRNSLGSDMMFLQKSHPLSDFILELYRTESHEGTEIPAE
LCHGVQGILNLDDDPILPDKAVKSPIPVLRDIAQNHAIGVRFKDPHYAAEFVFKAVVLPG
AKMPNKVLKPGDWEKGNREPWRPQLGFNQHRQQAHLDQSGFRALGHSINRNRGGGQYSNA
PPPNMYQQGNYRSAQSGGHQAFQHSRHNSLLGAPPSFQQPQYPRQQQQQQQQQQQPYGGR
GGHGWDRATQSQSSAYQQNASRGGGGGGGANAGGYQQRFDGRRDEWRDRRDEGRDNRGQQ
HQGYSAGRGYPPPPPSSRYNWN
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgttcttccgctggctcagcaggaaatacgcgtcgatcattgtgcac
tgtgtggaggagaaggggaaagaatgtaacggagtccgtatccccgtggatacgaccaag
ccgaaccccaacgaggtggaattcgacaacttgtacttggacatgaacgggatcattcac
ccctgtacacatccagaggacaaagccgcccccaaaaacgaggacgagatgatggtcgcc
attttcgagtacatcgaccgtctgtacaatattgtgcgtccgcggagagttctctacatg
gccatcgacggagtggctcctcgtgccaagatgaaccagcagcgctctcggcggtttcga
gcctccaaagaaggcgtggagttgacggaggagaaggatcgcatcagggaggagatcatc
gggaagggaggttatcttccacctgatgagattaaagagagatttgaccacaactgtatc
actccaggaacagagtttatggacaacctggcccagtgtcttagatactacgtcgcagac
agactcagcaatgatccgggatggaagaacgtcacggtcttcctgtctgatgccagtgtt
cccggtgaaggtgaacacaagattatggactacatcaggagacagagagctcaaccgaac
cacgacccgaacacgcaccactgcctgtgtggagctgatgctgatctgatcatgctcggt
ctggccacccacgagccaaacttcaccatcatcagagaggagttcaaacccaacaaaccc
cggccctgtgcactctgtggacaggttggtcatgaactcaaagactgtcagggggcgcca
agagagaaacagggacagcatgatgagtttgcagactcaatgccagtgtctgagcaggag
ttcatattcatcaggctgtgtgtgctgcgggagtacctggccagagagctgaccatgagc
agcctgccgttccccttcgactttgagaggagcgtagacgactgggtcttcatgtgcttc
ttcgttggaaatgacttcctgcctcatctgccgtccttagagatcagagagggagcgata
gaccgactggtcaacatctacaaagacgttgtgcacaaaactggaggctacctgacggag
aacggctacgtcaacctggagcgggtggagctgatcatgcaggcggtgggcgtggccgag
gacaacatcttcaagaaacgcaaagaggacgacgaaggcttcaagagaagaatgaaagat
aaacgaaagaggatgaaggcggagcagagaggccccgcctacctgaccgggggccagttc
gcccctcaggctctggggaggagagaccgacccgaggccgtccagaacgcccggcatcag
gccttcgacatgaggatgcagcacaacaaggatgcggctcagttcctgaaggcctctata
aagaacggtggcaattcgtctgcagggtccagtggcggcgcagacaacagaggggtgaag
aggaaagctgaggacagcgacagcgagccggaacccgaagacaacgtcaggttgtgggag
gacggctggaagcagagatactacaagaccaagtttgacgtggacgcgacggatgatgat
ttcagaaagagggtggtccggtcctacgtggagggtctctgctgggtgctgcgctactac
taccagggctgtgcctcctggaagtggtacttcccgttccactacgctcccttcgcctcc
gacttcaaagacatcaaagagatgttcacagactttgagaaggacaccaaaccgttcaag
ccactggagcagctgatgggagtgtttcctgccgccagcggcaacttcctgcccacaaca
tggcggagcctcatgagcagtccggagtcttccatcatcgacttctaccccgacgacttc
gccattgatctcaatggcaagaaatacgcctggcagggtgttgctttgctgccttttgtg
gatgaacgtcggctgagggcggctctggaggacgtctaccccgacctctcacctgaggaa
gtgagaagaaacagcctgggcagcgacatgatgtttctgcagaagtctcacccgctctcc
gacttcatccttgaactttaccgcacagaatctcacgagggcactgagatccctgcagag
ctttgccacggagtccaaggtatattaaatcttgatgacgaccctattctaccagataag
gcggtgaagtcaccgatcccagtgctgcgtgacatcgcacagaaccatgccatcggagtg
aggttcaaagatccccactatgcagctgagtttgtgttcaaggcggtcgtccttcctgga
gccaagatgcccaacaaggtcctgaagcccggggactgggagaagggcaacagggaacca
tggagaccccaactgggcttcaaccagcacagacagcaggctcacctggaccagtccggc
ttcagggctctgggtcacagtataaacagaaaccgtggtggaggacagtacagcaacgca
ccgccacccaacatgtaccaacaaggaaactaccgatctgcacaaagtggaggccaccag
gcattccaacattccaggcacaacagtttgctgggagcgccgccctccttccagcagccc
cagtatccgaggcagcagcagcagcagcagcagcagcagcagcagccgtacgggggcaga
ggcggtcacggctgggatcgggccacgcagtcgcagtcgtcggcgtaccagcagaacgcc
agccgtggcggaggcgggggcggcggcgccaacgcgggcggctaccagcagcgcttcgat
ggccgcagagacgagtggagagatcgaagagacgaaggcagggacaaccggggacaacag
caccagggctacagcgctggccgaggttaccctcctcctcctccatccagcagatacaac
tggaattaa
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