Anoplopoma fimbria (sablefish): 129107033
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Entry
129107033 CDS
T09102
Symbol
hnrnpub
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein Ub
KO
K12888
heterogeneous nuclear ribonucleoprotein U
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129107033 (hnrnpub)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129107033 (hnrnpub)
Spliceosome [BR:
afb03041
]
Common components
Common spliceosomal components
hnRNP proteins
129107033 (hnrnpub)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SPRY
SAP
AAA_17
CPT
Zeta_toxin
AAA_22
Motif
Other DBs
NCBI-GeneID:
129107033
NCBI-ProteinID:
XP_054474350
LinkDB
All DBs
Position
18:complement(21094234..21104418)
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AA seq
821 aa
AA seq
DB search
MSSMNVKKLKVNELKDELKKRDLSDKGLKAELMDRLQAALDEEALAGNPPLDQEAAAAEG
SGQAAEQEGMGEEEEGEGPVEESMEANEEVGEEEEEEEQPENGGGGGGGDAAAEDEEMGE
GEEDGDDGEDDEMDPMLKGDVDDMEKIDPEDGEPADQAAEGDADKDTNADQKNKKGVKRR
REEHGRGYFEFIEENKYSWASFKSPVPPLEEEDEEFDDTKVCLDTYNCDLHFKVSRDRYS
ASSLTMESFAYLWSGGKGTYGVNKGKACFEMKISEKIPVKHISSKNMEIHDVQVGWSLST
GTLLLGEEEHSYAYSGKGKKTTNCVTEDFGETYEENDVICCLIDFEGEELVLSFSKNGGE
PAVAFQVKKDSLNGQALFPHVICHNCAVEFNFGQMETPYFPQPEGYTFLQQIPVDDRVRG
LKGPQTKADCEIIVMVGLPGSGKTTWVKNHVQENPGKYYILGSDTIVDKMMINSLKRQSK
DITKLSAISQRAPLFLGKFIEIAARKKRNYILDHTNLSAPGQKRKMCLFAGFQRKAVVVC
PSDEDYKQRVQKKVESDGKEVPEHAVFKMKGFYSLPEGGESFSEVIYAELQKEEAGKLLE
QYKEESKTALPAEKKPNQGSTTPKRGGGLRGGGRGGKNQFGRGSGPGQRGGGRGGFQSRG
NFRGAPGPRGGFNRPPRGFLPPPAFRGGFHNRGNFNRGGGGPIPSLGGSPRGGPMRGNMG
PRGGHMNRGGPMNRGNMSRGGGVNMHRGGSRGHHNQFQQRGGNRGNFGNFGNKNGNFGNN
RNSGNFGNRNGMDKAQAFNQSWQQGFWNQKPWSQQYQPGYY
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaatgaacgtgaagaagctgaaagtgaacgagttgaaggacgagctgaagaag
cgggatctgtcggataaagggctgaaggccgagctgatggaccgcctgcaggccgcgctg
gacgaggaggccctggcaggaaaccctccgctggaccaagaggctgcagcggcggagggg
tcaggccaggccgcagaacaggagggcatgggagaggaggaagaaggcgaaggcccggtg
gaggagagcatggaggccaacgaggaggtgggagaggaggaggaggaggaagagcagccg
gaaaatggaggcggcggcggtggtggtgatgccgctgccgaagacgaagagatgggcgaa
ggggaggaagatggagatgatggagaggacgacgagatggacccaatgctcaagggagac
gtcgacgacatggagaaaatagacccggaggacggtgagcccgccgaccaggctgctgag
ggggatgcggacaaagacacgaatgctgatcagaagaataagaagggtgttaagagacgc
cgggaggaacatggaaggggctactttgaatttattgaagaaaacaaatacagctgggct
tcatttaagtctcccgtgccccccctcgaggaagaagatgaggagtttgacgacacaaaa
gtctgcctggatacctacaactgcgacctgcactttaaggtgtcacgggaccgttacagt
gcctcatctctcaccatggagagctttgcttacctctggtccggaggcaagggcacctat
ggtgtgaacaaaggcaaagcctgctttgagatgaagatttcagagaaaattcctgtgaag
cacatctccagcaagaacatggagattcacgatgtgcaggttggctggtccctgtctact
ggcaccctcctcctcggtgaggaagaacattcttatgcgtactctgggaaaggcaagaag
accaccaactgtgtgacagaggactttggagagacttacgaggagaatgatgtcatctgc
tgccttattgactttgagggagaggagctggtgttgtcgttctcaaagaacggtggagag
ccagccgtcgctttccaggtcaagaaggactccctgaacggccaggccctcttcccccac
gtcatctgccacaactgtgccgtggagttcaactttggccagatggagactccgtacttc
cctcagcccgagggttacaccttcctgcagcagatccccgtggacgacagagtccggggc
ctcaagggtccacagaccaaggctgactgcgagatcatagtgatggttggcctgccaggc
tctgggaagactacatgggtgaagaaccatgtccaagagaaccctgggaagtactacatc
ctgggcagtgacaccattgtggacaagatgatgatcaacagcctgaaacggcagtcgaaa
gacatcacaaaactgagtgccatttcccagcgagcacctcttttccttggaaagttcatc
gagatcgcggcccgcaagaagagaaactacatcctagatcataccaacctgtctgcccca
ggccagaagaggaagatgtgcttgtttgcaggcttccagcgcaaggctgtggtggtctgc
ccctctgacgaggactacaagcagagagtccagaagaaggtcgagagtgatggcaaagaa
gtgcccgagcacgccgttttcaaaatgaaaggcttctactccctgcccgaggggggagag
agcttcagcgaggtcatctatgcggagctgcagaaggaggaggccggcaagctgctggaa
cagtacaaagaggagagcaagacggctctgccggccgagaagaagcccaaccaggggagc
acaacgccaaaaagaggcggcggcctgcgcggtggcggccgtgggggcaagaaccagttt
ggccgtggcagtggacccggacagagaggcggtggccgcggaggcttccagagcagaggc
aacttcagaggagcccctggccctcgtggcggcttcaaccgtccacctcgtggcttcctc
cctcccccggccttcaggggagggttccataaccgtgggaactttaaccggggcggcggt
ggccccatccccagcttgggcggatcccccaggggcggaccaatgagaggcaacatggga
cccagagggggtcacatgaacagaggtggcccaatgaaccgtggaaacatgagcagagga
ggcggagtcaacatgcatcgcggtggttccaggggacatcacaaccagttccagcagaga
ggtggtaaccgtggtaactttggcaactttggaaacaagaatggcaacttcggtaacaac
cggaacagcggtaactttggcaacaggaatggcatggacaaggcccaagccttcaaccag
agctggcagcaagggttctggaaccagaagccatggagccagcagtatcagcctggatat
tactaa
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