Anoplopoma fimbria (sablefish): 129107076
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Entry
129107076 CDS
T09102
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04140
Autophagy - animal
afb04148
Efferocytosis
afb05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
129107076 (vps18)
04148 Efferocytosis
129107076 (vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
129107076 (vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129107076 (vps18)
Membrane trafficking [BR:
afb04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
129107076 (vps18)
Hops complex
129107076 (vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
VPS18_RING_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-RING_16
zf-RING_Vps41
zf-RING_UBOX
zf-RING_5
zf-C3H2C3
zf-ANAPC11
zf_RING_Vps8
zf-RING_11
Apolipoprotein
DUF1664
zf-rbx1
DUF4446
DUF2175
LETM1_C
zf-C4H2
STX17_N
Motif
Other DBs
NCBI-GeneID:
129107076
NCBI-ProteinID:
XP_054474416
LinkDB
All DBs
Position
18:complement(6051193..6057884)
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AA seq
981 aa
AA seq
DB search
MASILEEYEDSQNTRSAQQQSRLSTANIGITHTGFVNVRLEEEKPIFNKQRIDFTPPERI
NHLAVCNNQLCMSLGKDTLLRIDLAKPDQPNQIELGRKDESKVYRLFLDPTGSHLLICLS
TSECLYLNRNTQKVRSLSRWRGHLIESVGWNKVLGSETNTGPILVGTSQGIIFEAEISAT
EGSLFNTNPDQYFRQVHSLEEDGKPAPVCCLEVERALENKYFIIATTRKRLFQFVGKVAE
GSEQQGFSSIFSQNQDLLPSFQEFPANMGYSEITFYTSKLRTSPKAFAWMMGNGVLYGQL
DYVRPDSLLSDVQVWEYTPDIDLSLNKPISIVLTQFHFLLLLHDRVKAICTLNGQVVYED
VFPDKFGALKKMIKDPVGGLVWIYTERAVFRYHIQRESRDVWQMYMSMTKFDLAKEYCRD
RPECMDMVLAKEAEHCFQNKRYLESAKCYALTQNYFEEIALKFIEVKQEEALKEFLLKKL
NILKPSERTQITLLVTWLAELYLNRLGQLESDGNSVIFQETREEFRQFLGTSKHKECLYN
NRSTIYDLLASHGNVDDMVYFSVVMQDYERVISHYCQHDDYTAALDVLSKHCDQKLFYKF
SPVLMQHIPKKVVDAWIQMGKRLDPKKLIPALMNYSQMGSTQQISETIRYMEFCVYELTV
TEEAIHNYLLSLYAKYKPDSLLWYLEQAGIHSSEIHYDLKYALRLCAEKGYLRACVLVYR
IMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMNCLS
SCNLLKIEDILPFFPDFVTIDHFKEAICSSLEEYNQHIEELKQEMEEATESAKRIREDIQ
EMRNKYGVVDSQEKCAACEFPLLNRPFYLFLCGHMFHYDCLFQEVTPHLTAFKQNRLEEL
QKKLAATTQSSKSRHRAATKDEGDTSSLGKGNAGTSREQIKSDMDDIIASECVYCGDLMI
KSIDKPFIDPQKFEEEKSSWL
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaattcttgaagagtacgaggactctcaaaacaccagaagtgcgcagcagcag
agccgcctgtccactgccaacatcgggataacacatacaggctttgtgaatgtgagactg
gaggaagagaagccaatattcaacaagcagaggattgattttacaccaccagagaggatc
aaccatctcgcagtctgcaacaatcagctatgcatgagtctggggaaggacaccctgctg
aggattgacttggctaaacctgatcagcctaatcagattgaattaggaaggaaagatgaa
agtaaagtgtacagactgttcctggatcccaccggctcccatctgctgatctgcctgagc
accagtgagtgtctgtacctcaacaggaacacgcagaaggtgcgcagtctgtcccgatgg
agaggccacctcatcgagagcgtgggctggaacaaggtgctgggcagtgagaccaacacg
ggacccatactggtcggcaccagtcagggcatcatctttgaggcggagatctccgcaact
gagggcagcctgttcaacaccaatccggatcaatacttcagacaggtccactccctggag
gaggatggcaagcctgcaccagtctgctgcctggaggtggagcgggccctggagaacaag
tacttcatcatcgccaccacccgcaaacgcctgttccagttcgtgggtaaggtggccgag
gggtcggagcagcagggcttcagctccatcttcagccagaaccaggacctgctgcccagc
ttccaggagttcccagccaacatgggctacagcgagatcaccttctacacctccaagctc
cggacctcccctaaggcgttcgcctggatgatgggtaatggggtcctctatggtcagctg
gactacgtcaggcctgactccctgctgagtgatgtgcaggtatgggagtacacccccgac
atagacctcagtctcaacaagcccatctccattgtgctgacacagttccacttccttctg
ctgctccatgaccgagtcaaagccatctgcactctgaacggacaggtggtatatgaggat
gtgttcccagataaatttggcgccctcaagaagatgatcaaggaccccgttggtgggttg
gtgtggatctacactgagcgggcggttttccggtaccacatccaacgcgagtccagggac
gtctggcagatgtacatgagcatgactaagtttgacctggccaaagagtactgccgagac
cgccccgagtgcatggacatggtgctggccaaggaggccgagcactgcttccagaacaag
cgatacctcgagagcgccaagtgctacgccctgacccagaactactttgaagagatagcg
ctcaagttcatcgaagtcaaacaagaggaagccctgaaggagttcctgctgaagaagctg
aatattttgaaaccgagcgagagaacgcagatcaccttgctggtcacctggctggccgag
ctctacctgaaccggctcggccagctggagagcgacggcaacagcgtcatcttccaggag
acccgcgaggagtttcgccaattcctcggcacctccaagcacaaggagtgcctgtacaac
aaccgcagcacaatctacgacctgctggccagccacggcaacgtggacgacatggtttac
ttctcagtcgtcatgcaggactacgagagagtgatatcccactactgccaacacgacgac
tacactgccgctctggatgtgctctccaagcactgtgatcaaaagctcttttacaagttc
tccccagtcctcatgcagcatattcccaaaaaagtggtggacgcgtggattcagatgggc
aagcggctggacccaaagaaactcattccagctctgatgaactacagccagatgggcagc
acccagcagatcagtgaaaccatccgctacatggagttctgtgtgtacgagctcacagtg
acagaggaggccatccataactacctgctgtccctctatgccaagtataagcccgactct
ctgctgtggtatctggagcaggcaggcatacactcctcagagatccactatgacttgaag
tacgccctcaggctgtgcgcagaaaagggctacctccgggcctgtgtcctggtttatagg
attatggaactgtatgaggaggcagtggatctagctttacaagtagatgtagacttggcc
aagtcctgtgcagacctgcctgaagatgacgaggagctgaggaaaaagctttggctgaag
atcgcccggcatgtggtgcaggaggagaaagatgtgaagaaagccatgaactgtctgtcc
agctgcaacctgctcaagatcgaagacatcctgcccttcttcccagactttgtcaccatc
gaccattttaaggaggccatctgcagctccctggaggagtacaaccagcacatcgaggag
ctgaaacaggaaatggaggaggccacggagagtgccaaacgcatcagagaagacatccag
gaaatgaggaacaaatatggcgtagtggattcccaagaaaagtgtgccgcttgtgaattt
ccgttgctcaacaggccgttctacctgttcctatgtggacacatgttccactatgactgc
ctgttccaggaagtaacccctcacctgacggcatttaagcagaatcgtctggaggagctg
cagaaaaagctggccgcaaccacgcaatcctccaagtctcgccaccgcgcggcgaccaag
gacgaaggcgacacctccagcctggggaagggcaatgcaggcacaagtcgtgagcagatc
aaatcagacatggatgacatcattgcgtccgaatgcgtgtactgcggcgacctgatgatc
aagtccatcgacaagcctttcattgatccgcagaaatttgaggaggagaagtccagctgg
ctatga
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integrated database retrieval system
