Anoplopoma fimbria (sablefish): 129107089
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Entry
129107089 CDS
T09102
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
129107089 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129107089 (trim54)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
129107089 (trim54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-C3HC4_4
zf-RING_5
zf-C3HC4_3
zf-RING_2
zf-RING_6
TRIM_CC
Sina_RING
zf-RING_10
Carn_acyltransf
CoiA_N
Rota_NSP3
Zn_ribbon_FGT1_2
DUF5799
Aldedh
Motif
Other DBs
NCBI-GeneID:
129107089
NCBI-ProteinID:
XP_054474432
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All DBs
Position
18:17370660..17381904
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AA seq
365 aa
AA seq
DB search
MNFALRPPSAGSSGPGAGRGATMENLEKQLICPVCLELFSKPVVILPCQHNLCRKCANDV
LQSANPLWQSRGSSSMTSSGARFRCPSCRHEVVLDRHGVYGLQRNLLVENILDIYRQQQS
SSLVNIKPEKQQPLLCEEHEEEKINIYCLSCETPTCSMCKVFGKHKDCEVAPLSSVYMRQ
KTDLSDGIAILVASNDQVQVVISQMEEIYRTIEENGQRRREQLVNRFDSLVAVLDERKQE
LVGLITKEQDDKLKRVRSLICQHSEHLEAAVTLVESAIQSIEEPHMPLFIQSANVILEKM
AVTARACNMERPELGYDNMSHFVIDTDDLADMLRNMDFSSGVGDDEEEDPEEGGEESELD
LCSRF
NT seq
1098 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgctctcaggcctccatcagcaggcagttctgggcccggcgccggcagagga
gccaccatggagaacctggagaagcagctgatctgcccagtctgcctggagttgttctcc
aaacccgtggtcatcctgccctgccagcacaacctctgtcgcaagtgtgccaatgacgtc
ttgcagtcagctaatcctctgtggcagtcccgcggctcctctagcatgacttccagtggc
gctcgcttccgctgtccatcgtgccgccacgaggtggtgctggaccgtcacggggtctac
ggtctacagaggaacctgctggtggagaacatcctagacatctacagacagcagcagtcc
tccagccttgtgaacattaagccagagaagcaacagcctctgctgtgtgaagaacatgaa
gaggagaagatcaatatctactgcctgtcctgtgagacgccgacctgctccatgtgcaaa
gtgttcggaaaacacaaagattgtgaagtggcaccgctcagcagcgtttacatgagacag
aagacagacctgagcgatggcatcgcgatcttggtcgccagtaacgaccaagtccaggtg
gtcatctctcagatggaagaaatataccgcactatagaggagaatggtcagcgacggaga
gaacagctggtcaaccgctttgacagcctggtggccgtcttggacgagcggaagcaggag
ctggtgggactcatcaccaaagaacaggacgataaactaaaacgtgttcgatccctcatt
tgccagcacagcgagcacctggaggccgcggtgacgctggtggagtcggccatccagtcg
atcgaagagccacacatgcctttgtttatacagagcgccaacgtcatactggaaaagatg
gcagtgacagccagggcctgtaacatggagcgtccagagctcggttatgataatatgagc
cactttgtcatcgatactgacgacctcgctgacatgctgaggaacatggacttctcatcc
ggtgtgggagatgatgaagaggaagatcctgaagaaggtggagaggagtcagaacttgac
ctctgctccagattttga
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