Anoplopoma fimbria (sablefish): 129107240
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Entry
129107240 CDS
T09102
Symbol
farsb
Name
(RefSeq) phenylalanine--tRNA ligase beta subunit
KO
K01890
phenylalanyl-tRNA synthetase beta chain [EC:
6.1.1.20
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
129107240 (farsb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
afb01007
]
129107240 (farsb)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
afb03016
]
129107240 (farsb)
Enzymes [BR:
afb01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.20 phenylalanine---tRNA ligase
129107240 (farsb)
Amino acid related enzymes [BR:
afb01007
]
Aminoacyl-tRNA synthetase
Class II (U)
129107240 (farsb)
Transfer RNA biogenesis [BR:
afb03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
129107240 (farsb)
Prokaryotic type
129107240 (farsb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_synthFbeta
EF1_GNE
PhetRS_B1
B5
B3_4
EF-1_beta_acid
Arc1p_N_like
EAD7
Glyco_hydro_77
Motif
Other DBs
NCBI-GeneID:
129107240
NCBI-ProteinID:
XP_054474690
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All DBs
Position
1:3985502..4001467
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AA seq
846 aa
AA seq
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MPTVGVKRDLLFKALGRTYTDEEFDELCFEFGLELDEITSEKEIISREQGDSKASGASDV
ILYKIDVPANRYDLLCLEGLVRGLQVFKNKLEAPRYRRVSPVSGEPQRLIITKETAAVRP
HAVAAVLRNITFTQERYDSFIELQDKLHHNVCRKRSLVAIGTHDLDTVSGPFTYTAKPPG
DISFKPLNQSKEYTATQLMSLYKTDSHLKHFLHIIEDKPLYPVIYDSNGIVLSMPPIING
DHTKISLKTKNVFVECTATDLTKAKIVLDMMVTMFSEYCAQPFTVEEAEVVYPDGKTCKY
PELAYRKEKLSSEFINRKVGINESTEKIAQLLTKMCLRSEVTGVGDEIEVEIPPTRSDVI
HACDIMEDAAMAFGFNNIPYTTPRTYTIANQFPVNKLTELLRQDLAAAGFTEALTFALCS
KEDIADKLGKKISETGAIHIANPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISD
VVLKDDTKDVGARNSRRFCAVYYNKSPGFEVIHGLLDRTMQLLDVKPARGDGYHIQASDD
STFFPGRCAEIFVRGKSVGRLGVLHPDVVNRFELTMPCSALEMDIEPFLGHTAETTLSHN
VPMQEVVKHKFPTRAEPPRAPSSRPTSTKTVFGDVSAAAGLKALNDFLADKSYMEGFAAS
QADVAMFDVIPSAPAATFCHLTRWYNHIKTFQRERDNLPLAERQFVLPDLTNDDEEDEDD
DIDLFGSDDEAESAEADRIKEQRLAEYAAKKSKKPALIAKSSILLDVKPWDDETDMAELE
ARVRSVAMDGLLWGQSKLVPVGYGIKKLQIGCVVEDDKVGTDLLEEAITAFEEYVQSVDV
AAFNKI
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atgccgactgtcggagtgaaaagagatcttctgttcaaagctttgggcagaacatacact
gatgaggagtttgacgagctgtgctttgaatttggtctggagctggatgaaattacctca
gagaaggagataatcagccgagagcagggtgactccaaggcctcaggggcgtctgatgtc
atcctgtacaagatcgacgtaccagccaaccgctatgacctgctgtgtctggagggcctg
gtccgtggactgcaggtcttcaagaacaagttggaggcacctcgctacagacgagttagc
cccgtcagcggggagccccagaggctgattattactaaggagacggcggcagtgcgaccc
cacgccgtggcagcggtgttgaggaacatcaccttcacacaggagcgctacgacagcttc
atcgagctgcaggacaaactccaccacaacgtctgcaggaagaggagcctggtggccatc
gggactcatgacctggacaccgtctccggtcctttcacgtacacggccaaacctccggga
gacatcagcttcaaacccctcaaccagagcaaagagtacacggccacccagctcatgagc
ctctacaagacagacagccacctgaagcatttccttcacattattgaggacaagcctttg
taccccgtcatctacgacagcaatggtatcgtcctgtccatgcctcccatcatcaacggt
gaccatacaaaaatctccctgaagacgaagaacgtctttgttgagtgcacggccacagac
ctgaccaaggcaaagatcgtgttggacatgatggtgaccatgttcagcgagtattgtgct
caacctttcacggtggaggaggctgaggttgtgtacccagacggaaagacctgcaaatac
ccagagctcgcttacaggaaggagaagttgtccagcgagttcatcaacagaaaagttggc
atcaacgagtcaacggagaaaatcgcccagctgctgaccaagatgtgcctgcgctccgag
gtcacaggcgttggcgacgagatcgaagtcgagatcccgcccactcgctccgacgtcatc
cacgcctgtgacatcatggaggacgccgccatggcttttggattcaacaacatcccctac
accacgccacgcacctacaccatcgccaatcagttcccagtgaataagctgacagagctg
ctgagacaagacctggcagctgctggattcacggaggccctcacctttgccctatgttct
aaagaagatatagcagacaagcttggaaagaagatctcagagaccggagcgattcacatc
gccaaccccaagacggcggagttccaggtggcgcgcacaaccttgctgcccggcctgctg
aagaccatagctgccaacaggaagatgccccttcccctcaagctgtttgagatatctgac
gtggtgctaaaggacgacaccaaagatgtcggggcgaggaacagccggcgtttctgtgcc
gtttactacaacaagagccccggcttcgaggtgatccacggcctgctggaccggaccatg
cagctcctggatgtgaagccggcccgcggggacggataccacatccaggcttcagacgat
tccacctttttccccggtcgctgcgcggagatctttgtccgtgggaagagcgtggggcgt
ctcggcgtcctccacccggacgtcgtcaaccgcttcgagctgaccatgccctgctccgcc
ctggagatggacatcgagcccttccttggccacactgcggaaaccaccctctcacacaac
gtccccatgcaggaagtcgtcaagcacaagttccccacgcgggccgaaccccctcgggcg
ccgtcttcccgtccgacctctactaaaactgtgttcggtgacgtgagcgcggcggccggc
cttaaagcgctcaatgattttctggcggacaaaagctacatggagggattcgcggcgtcc
caggcggacgtggcgatgttcgacgtcatcccctctgcccccgccgcgaccttctgccac
ctcacacgctggtacaaccacatcaagaccttccagagggagagagacaacctcccattg
gctgagagacagtttgtcctccctgatctgacaaacgatgacgaagaagacgaagacgac
gacattgacctctttggctcggatgacgaggccgagagcgccgaggcggacagaatcaag
gagcagcgcctcgccgagtacgccgccaagaagtccaagaagccggcgctcatcgccaag
tcctccatcctgctggacgtcaagccctgggacgacgagacggacatggccgagctggag
gcgcgcgtccgcagcgtcgccatggacgggctgctctggggtcagtccaagctggtcccc
gtgggctacggcatcaagaagctccagataggatgcgtggtggaggacgacaaagtgggc
acggacctgctggaggaggccatcaccgccttcgaggagtatgttcagtccgtggacgtg
gccgcgttcaataagatctga
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