Anoplopoma fimbria (sablefish): 129107716
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Entry
129107716 CDS
T09102
Name
(RefSeq) contactin-1a-like isoform X1
KO
K06759
contactin 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
129107716
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129107716
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
afb00537
]
129107716
Cell adhesion molecules [BR:
afb04515
]
Immunoglobulin superfamily
Contactins
129107716
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
afb00537
]
Others
129107716
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
Ig_5
C2-set_2
Ig_4
Pur_ac_phosph_N
Tissue_fac
DP-EP
Motif
Other DBs
NCBI-GeneID:
129107716
NCBI-ProteinID:
XP_054475196
LinkDB
All DBs
Position
19:20065715..20113922
Genome browser
AA seq
1058 aa
AA seq
DB search
MLLVKRLKEGVRRKPGSPANVPSAELLAVTPPGGPHFNIMLHLTLLLHLLVLSLSPADAS
MHEEVPGFYGEEATGYGPVFEEQPVDTIYPEESPEAKITMSCRARADPPATYKWKLNNID
IDLNTQERHYSLVGGNLVISKPIKTEHVGQYFCLATNIYGTVISREASVQFGYLDLFSSE
ERESVYVKEGQGAVLLCAPPPHHPDELSFRWILNEFPTFIPLDKRRFVSQITGNLYISKV
DSSDSGNYSCIASSPSISKSVFSNYIPLVPLAERPIRKYPADLKVKFPDTTALVGQNITL
ECFALGNPVPEIRWKKIDGPLPLTHEVRMAGAHLHLYNVQSEDAGSYQCEAVNSRGKDYH
AARVSVEAFPEWVEHISSTEQDLGRDYTMSCIASGKPEPRIHWLKNGQPSHKKEMRFSSL
TFDDSGMYQCIAENNHAIIYATAELRVYACAPTFEHNPVKRVLAAKKGRVVIECRPKAAP
KPNFSWSKDTELLHNSTRVFIWEDGSLEILNVTRADEGRYTCFAENDRGKANSTGSLVVT
DSTKITLAPSNADVKVGENTRMQCAASYDPSLDITFIWSLDGRVIDLHKESQHYERTLNG
SSNGELLIRDLQLKHAGRYTCTAQTPIDNVTASAHLVVRGPPGAPGGVRVVNKTDQNVTL
QWSRGADNHNPISKYTIQYRDSFSKDVWKNATTSPTDVEGNTEMATAVDLIPWMEYEFRV
IATSTLGTGEPSSPSPKIKTLEAFPVVAPSDVGGGGGNSRELTITWTPVQPQYYYGPDFG
YIVAFKPQDGTQWMRVTVADPQAKRYVHKDSTIPPMTDYQVKVKAFNRKGEGPFSLTAVI
SSAQDAPSEAPVRVDGRALSATEAIVWWLPLSQSNIDGYQVKYWRNHEDSEGGAQRVVVP
GSENHTRLEGMKPDSHYLIEVRGYNSAGYGPASEHHQIHTKRPPPSRAPKILGKKFKGQS
VNIAWEPVKPLANEASIEGYKVLYRQQGHSTGTLYTTTRQNIDLPMFSDGNYVVEVRAHS
EGGDGAVAQISITGGGVMSAPSLSVLSLLLVASLCLNL
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttgtgaagaggttaaaggagggagtaagaagaaaaccaggcagtcctgctaat
gtcccatcagctgagcttctagctgtaaccccaccaggtggtcctcacttcaacatcatg
ctgcacctcaccctgctcctccatctcctggtcctctctctctcccctgcagatgcatca
atgcacgaggaggtacccggcttttatggagaagaagccacaggttatgggccggtgttt
gaggagcagccggtggataccatctaccccgaggagtcgcccgaggcaaaaatcaccatg
agctgccgggcccgagccgatccacctgccacatacaagtggaagctgaacaacattgac
attgacttgaatacacaagaacgccactacagtttagtaggaggcaacttggtcattagc
aaacccattaaaacagaacacgtaggccagtacttctgtttggctaccaacatctatggc
acagtcatcagccgagaggcctcggtccagttcggatatctcgaccttttctcgtcggag
gagagggagtcggtgtacgtcaaagagggacagggggcagtgctgctctgcgctccccca
ccacatcatccagatgagctgtcattccgatggatcctgaatgaattccccaccttcatc
ccactggacaagaggcgctttgtctcccagataacgggtaacctctatatctccaaggtg
gactcctccgacagcggcaactactcctgcattgcttccagcccatccatttccaagagc
gttttctccaactacatccccctcgtacctctggctgaacgtcccatcaggaaataccct
gctgacctcaaagtcaagttcccagacaccactgctctggtgggacagaatatcaccttg
gaatgctttgctctggggaatcctgtccccgagatccgctggaagaagatagacggaccg
cttccactcactcacgaggtgcggatggcgggggctcatctgcacctgtacaatgtgcag
tctgaagacgcgggcagctatcagtgtgaggctgtgaactccagagggaaggactaccac
gctgcacgtgtgtccgtagaagcttttcctgagtgggtggagcacatcagcagcacagag
caggacctgggcagagattacaccatgtcctgcatagccagcggcaaacctgaaccacgc
atccactggctgaaaaatggacaaccgtctcacaagaaagagatgaggttcagcagcttg
acattcgatgattcagggatgtaccagtgcattgcagagaacaaccacgcaatcatatat
gctactgcagagctgcgtgtgtatgcctgtgctcccacgtttgaacacaaccctgtgaag
agagtcctggcagctaaaaaaggccgggtggtgatcgagtgtcgacccaaagcggctcca
aagcccaacttctcctggagcaaagacacagagctgctccacaactccaccagggtgttc
atctgggaggatgggagcctggagatcctcaacgtgacgcgggcagatgaaggcagatac
acctgcttcgccgagaacgaccggggcaaagctaacagcacgggctctctggtggttaca
gattccacaaagatcaccctggcaccgtccaacgctgacgttaaagtgggtgagaacacc
aggatgcaatgtgccgcgtcatatgacccctccctggacatcaccttcatctggtccctg
gatggccgggtcattgacctacacaaggagagtcaacattatgaacgcaccctgaatgga
agctcaaacggagagctactgattagggacctccagctgaagcatgccggacgctacacc
tgcaccgcacagacccccattgacaatgttaccgcctcggcccacctggtcgtcaggggt
ccccccggtgcaccaggtggggtgcgagtggtgaacaaaactgaccagaatgtaacattg
cagtggagccgtggagcagacaaccacaaccccatctccaaatacaccatccagtacagg
gactccttctcaaaggatgtctggaagaatgcaactacatctcccacagatgttgaaggg
aacacagagatggccacagctgtggatttgatcccctggatggaatatgagttcagagtg
attgccaccagcactctggggacgggagagccaagcagcccttcacctaaaatcaaaacc
ctggaagcatttcctgtggtggcgccctcggacgtcggtggcggtggaggaaatagcaga
gagctgaccatcacgtggacgcctgtacagccacagtactactatgggcctgattttggc
tacattgtggccttcaaaccacaagatggaacccagtggatgagggtgacagtggctgac
ccccaggccaagcgctacgtccacaaagactccaccatccctccgatgacagattatcaa
gtcaaagtcaaagcattcaacaggaaaggagagggacccttcagcctcacagccgtcatt
tcttctgcacaggacgctccatctgaagctcctgttagggttgacggcagagctctctcc
gccacggaggccatcgtctggtggctgcctctctcacagagcaatatagatggataccag
gtgaagtactggaggaatcatgaagacagtgaagggggggcccagagggtggtggtaccc
ggcagtgagaaccacaccaggctggagggtatgaagccggactcccactaccttatcgag
gttcggggctacaactctgcaggatacgggccggccagcgaacaccaccagatccacacc
aagagaccccctccaagtcgagctcccaaaatacttggtaaaaagttcaagggccagtct
gtaaatattgcctgggaaccggtgaaaccgcttgctaacgaggcatcaatagaaggttat
aaagtgctgtacaggcagcagggccactccacaggcactctgtacaccaccaccaggcag
aacatcgaccttcccatgttctcagacgggaactatgtggtggaggtccgggcacactcg
gagggaggagacggggctgtggcacaaatcagcatcacaggtggaggtgtcatgtccgcc
ccgtctctcagcgtgctctctctgctcctggtggcttccctctgcctgaacctctga
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