Anoplopoma fimbria (sablefish): 129107720
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Entry
129107720 CDS
T09102
Symbol
lrp5
Name
(RefSeq) LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 5
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04150
mTOR signaling pathway
afb04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
129107720 (lrp5)
04150 mTOR signaling pathway
129107720 (lrp5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129107720 (lrp5)
Membrane trafficking [BR:
afb04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
129107720 (lrp5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
EGF_LRP2
SGL
cEGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
129107720
NCBI-ProteinID:
XP_054475202
LinkDB
All DBs
Position
19:complement(14731276..14795598)
Genome browser
AA seq
1647 aa
AA seq
DB search
MDLTRRGLEMGGLLVALLLWSCLLSVDGSPLLLFANRRDVRLVDADGVRGESAIVVSDLE
DAAAVDFLYSEGLIFWTDVSEEAIKQTHWNQSSNSLKEALGTGTTVVVSGLDSPDGLACD
WLGRKLYWTDSETNRIEVANLDGTSRKVLFWMDLDQPRAIALNPAQRYMYWTDWGEEPRI
ERAGMDGSNRKVIVLADIYWPNGLTIDLVEQKLYWADAKLSFIHRANLDGTARETVVEGT
LTHPFALTLSEETLYWTDWQTRSIHACNKHSGDKTREILSGIYSPMDIQVLESYRQPNIQ
TPCSDNNGGCSHLCLLSPVQPFYSCACPTGVQLKPDGKTCKPGAEQVLLLARRTDLRRIS
LDLPDFTDIVLQVEDIRHAIAIDYDPVEGYVYWTDDEVRAIRRSHIDGSNAVTLVTTEIN
HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRKILISDNLDEPRAIVLDPINGFMYWT
DWGEHPKIERANLDGTERLVLINSSLGWPNGLAIDYLAGKLYWXDAKTDKIEMINVDGSN
RQTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKATAVREIIIDQLPDLMGLKATKV
TEAHGTNGCAEDNGGCSHLCFWCRQAVSCACPMGMELLSDLQTCVVPEAFLLFTNRDNIR
SISLGTNSNDVPIPLTGVKEASALDFDVSERRIYWTDIQAKTISRAYMNGSSVEHVIEFG
LDYPEGMAVDWMGRNIYWADTGTNRIEVARLDGQHRQVLVCKDLDNPRSLDNPRSLALDP
GNGYMYWTEWGGRPRIARAYMDGSTVTTLVDKVGRANGLTIDYVDHRLYWTDLDTCMIES
TNMQGLQREIIVDDLPHPFGLTQYRDFIYWTDFNLRSIERADKRSGLNRTVVLQGQLELM
LDILVFHSSRQEGTNECSHNNGNCGHLCLATPAGAQCRCASHYTLNPDGRNCSSPSSFLL
FSQKASISRMVLGEQSPDIILPIHVLRNVKAVSYDPLDRLVYWLDGRQNIRRARDDGTMS
SMIVSSSVQPVENQLHDLSLDPYSRHIYWTCETTNTINVQRMDGHTVGVVLKDDTDKPRA
IVVNAEKGYMYFTTVQERSAKIEGASLDGTERESLFTTGLIRPVALALDNKLGKLFWVDA
DLKRIESSDLTGANRIVLQDSNILQPTGLTVLGDHLYWIDRQQQMIERVDKLTGDGRTRI
QGRISYLTSIHAVEEMDPQEFASHPCSRDNGGCSHICIAKGDGTPRCSCPMHLVLLQDLL
HCGEPPTCSTEQFTCSTGEIDCIPMAWRCDGFPECDDSSDEENCPVCSTSQFQCDKGGCI
DAHRRCNGEPDCADQSDEHHCGTICQPNQFRCGDNQCITKKQQCDNYSDCPDGSDELACE
YVSPPSSGIPNAGPNTIGPVIAIILLVFVIGGAYFVCQRVVCRRYKGPSGTFPHEYISGT
PHVPLNFIAPSSSQHGTFQGISCGKSMMSSVSLMGSSSSGAPLYDRNHVTGASSSSSSST
KGAFYPQILNPPPSPATDRSLYNTEIFYSSNSPSTTRSYRPYHPVRGAAPPTTPCSTDVC
DSDYXPHHPPAGPASSAGRWKTAGHGGHGKHNKYYMDLNSDSDPYPPPPXPRSQYLSAEE
SCPPSPSTERSYFHLCPPPPXPCTDSS
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atggatttaacgcgcagaggacttgaaatgggcggtctgctggtggcgttgctgctgtgg
agttgcctgctgtcggttgacggctcacctctcctcctgttcgccaaccggcgcgacgtg
cgcctggtggatgccgatggcgtgcggggcgagtcggccattgtcgtcagtgacctagag
gatgcggcggcggtggacttcctgtactctgagggactgatattttggacagatgtcagc
gaagaggccatcaaacagacgcattggaatcagtcatccaactcccttaaagaggcgctg
ggaaccggcactactgtggtagtgtcagggctggacagtcccgacgggctggcctgtgat
tggctgggcaggaagctctactggacagactcggagaccaatcggattgaagtggccaac
ctggacggcacctccaggaaggtcctgttttggatggacttggaccagcccagggcgatc
gccctcaaccccgctcaacgctacatgtactggacagactggggagaggagcccaggata
gagcgtgctggaatggacggcagcaacaggaaagtcatagtgttggcggacatctactgg
cccaacggtctgaccatagacctggtggagcagaagctgtactgggcagacgccaagctc
agcttcattcacagagctaacctggacggaacagcacgtgaaacagtggtggagggcacc
ctgacccatcctttcgccctaacgctgtctgaggagactttatactggaccgactggcag
acgcgctccatccacgcctgtaacaaacacagcggggacaaaaccagagagatcctcagt
gggatttactctcccatggacatccaggtcctggagtcttatcggcagcctaacatccag
actccctgcagtgacaacaacggaggctgtagtcatctctgcctcctctctccagttcag
ccgttctacagctgcgcctgccccacgggagtccagctgaaaccagatgggaagacgtgc
aaaccaggagcagagcaggttttgctgctggctcgacggactgacctgaggagaatctca
ttggacctgccagacttcaccgacatagtactccaggttgaagacattcgccatgccatc
gcgatagactacgacccggtcgagggttacgtctattggacggacgatgaggtgcgagct
atccggcgatcccacatcgatggcagcaatgccgtgacactggttaccacggagatcaac
cacccggatggtatagctgtggactgggtggccaggaacctttactggaccgacactggc
actgaccggattgaggtcaccagactgaatggaacctctcggaagattttgatatctgat
aacctggatgaacccagagccatcgtcctggaccccattaatggcttcatgtactggacc
gactggggcgagcatcccaagatcgagcgggccaatctggatggaacagaacggttggtt
ctgatcaacagctctctgggctggcccaacggactggccatcgattacttggcaggaaag
ctttactggngggacgccaagaccgacaagatagagatgatcaacgtggacggcagtaac
aggcagactctgctggaggacaagctgccccacatcttcggcttcaccctgctgggggac
tacatctactggacggactggcagaggcgcagcatcgagagggtccacaaagccacggcc
gtgcgggagatcatcatcgatcagctgccggatctgatggggctgaaggccaccaaagtg
acggaggcgcacggtacaaatggctgcgcggaggataacggcggatgcagccacctgtgt
ttctggtgtcggcaggccgtcagctgtgcctgtcccatggggatggagctgctctcagac
ctgcagacctgtgtggtgcccgaggccttcctgctcttcaccaacagggacaacatcagg
agcatctctctgggtaccaacagcaacgacgtgcccatccctctgacaggagtgaaggag
gcctcagctctcgactttgatgtctctgaaaggagaatatactggacagacatacaggcc
aagacaatcagcagagcgtatatgaacggcagctctgtagagcatgtcatagagttcggg
ctggactacccagaaggcatggccgtcgactggatgggtcgcaacatctactgggctgat
acgggcaccaaccgcatcgaggtggcccggctggacggccagcaccgacaggttctggtc
tgtaaggatctggacaacccgcgctcgctggacaacccacgatcactggcactggacccg
ggcaacggctacatgtactggacagaatgggggggtcgacctcgtatagccagagcctac
atggatggcagcaccgtcacaaccttggtggacaaagtcggccgggccaacggactgacc
atcgactacgtagaccatcgactctactggaccgacctggacacgtgcatgatcgaaagc
accaacatgcaaggccttcagagggagatcattgtggacgacctcccccaccccttcggt
ctgactcagtaccgggacttcatctactggacggattttaacctgcgcagcatcgagcgg
gcagacaaacgcagcggactcaaccgcaccgtggtgctgcagggccagctggagctgatg
ctggacatcctggtgttccactcctctcgccaggaggggaccaacgagtgctcccacaac
aacggcaactgcggccatctttgcctggccacgcccgccggtgcccagtgccgctgcgcc
tcccactacactctgaaccccgatggacgaaactgtagctctccctctagcttcctgctc
ttcagccagaaggcgagcatcagccggatggtgctgggagagcagagtccagacatcatc
ctgccaatccacgtcctcaggaacgtcaaagccgtcagctatgacccactggaccggctc
gtctactggctggacggacggcagaacatccgcagggccagagacgacggaaccatgtcg
tccatgatcgtgagcagcagcgtccagccggtggaaaaccagctccacgacctgagcctg
gacccctacagccgccacatatactggacctgtgagacgaccaacaccatcaacgtccag
aggatggacggacacaccgtgggcgtggtcctgaaggacgacaccgacaagccgcgggcc
atcgtggtcaacgccgagaaaggatacatgtatttcaccacagtgcaggagcgctcagct
aagatcgagggagccagtctggacgggacagagagagagtctctgttcaccactggtctg
atcagaccagtagctctggctctggacaacaaactggggaaactgttctgggtcgacgcc
gacctcaaacgcatcgagagcagtgacctgacaggagccaatcgcatcgtcctccaggac
tccaacatcctccagcccacggggctgacggttctgggggatcatctgtactggatcgac
cggcagcagcagatgatcgaaagggtggacaagctgaccggggatggacgcacacgcata
cagggacgtatctcatacctgacctccatccacgctgtggaggagatggacccacaggag
tttgcatcccacccttgttcccgtgacaacggcggctgctcccacatctgcatcgccaag
ggagacggcacacctcgctgctcctgtcccatgcacctggtgttactgcaggacctgctg
cactgtggagagcctcccacctgctccacggagcagttcacctgctccacgggggagatc
gactgcatccccatggcctggcgttgcgacggcttccccgagtgcgacgacagcagtgac
gaggagaactgccccgtctgctcgacctcccagttccagtgtgacaaaggaggctgcatc
gacgcccatcggcgctgcaacggcgaaccggactgcgccgatcaatccgatgagcaccac
tgtggaaccatctgccaacccaaccagttccgctgtggagacaaccagtgcatcaccaag
aaacaacagtgtgacaactactcggactgtcccgacggatctgatgagctcgcctgtgag
tacgtgtcacctccctccagtggcatccccaacgccgggcccaacaccatcggccccgtc
atcgccatcatcctgctcgtcttcgtgattggtggagcttacttcgtctgccagcgcgtg
gtgtgtcggcgctacaagggccccagtggaacgtttcctcacgagtacatcagtggaacg
ccccacgtgcccctcaacttcatcgcccccagtagctcccagcatggcaccttccaaggt
atttcctgtgggaagtccatgatgagctcagtcagcctgatgggcagcagcagcagtgga
gctcctctctatgacaggaaccatgtgactggagcctcgtccagcagctcatcatctacc
aagggagccttctacccacagatcctgaaccctcctccgtccccggctactgaccgctct
ctctacaacacagagatcttctactcgtccaacagtccgtccaccaccagatcatacaga
ccctaccacccggtccgcggtgccgccccgcccaccactccctgcagcaccgatgtctgc
gacagcgactacnacccccaccacccaccagccgggccggcgtcatcggcgggccgctgg
aagaccgcgggccacggcgggcacggcaaacacaacaagtactacatggacctgaactcg
gactcagacccctaccctccgccccccnacccccgctcccaatacctgtcggcagaggag
agctgccccccgtccccgtccaccgagcgctcttacttccacctgtgccccccgccccct
ncgccctgcaccgactcctcgtga
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