Anoplopoma fimbria (sablefish): 129107877
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Entry
129107877 CDS
T09102
Symbol
nlrc5
Name
(RefSeq) NLR family, CARD domain containing 5 isoform X1
KO
K22615
NLR family CARD domain containing 5
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
afb04054
]
129107877 (nlrc5)
Pattern recognition receptors [BR:
afb04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
129107877 (nlrc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
Atypical_Card
AAA_30
NOD2_WH
AAA_25
ABC_tran
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
129107877
NCBI-ProteinID:
XP_054475449
LinkDB
All DBs
Position
19:complement(12054036..12089344)
Genome browser
AA seq
1892 aa
AA seq
DB search
MDEEVFPDAENVNSVLAQESSELLHILSGQSPVVIMKLCQMMPSYAGWDINLASSIPPAA
AVTEHIKAVLEYFRVAKAEDCRNFLQSMCILCENIPMHLESRLMSVAGYENSACEHSSSS
VTGGKSSSPPSEQLVKRPRIDYWPQYKAAVMLFQKRRWERLSERLVSEVQLENVWVSLRT
ANRGRDRPDQTPGSADKGGRTPEPDGDYGAMDSRVTLETFLQGCAGKVTVLVGPAGSGKT
LLMSCLGQHWAQGLGPVPSSYLFVLLEFRQLNLRSQPLSLSDLLFRHYVPMKEGDHKKEA
IVDYLLSNPEQSCWVLDGYDEFHSKLTKQEVQRELLDPERPLPVADLISGLLNRQLLPGC
TVMVTCRVRDVIDLEGVSDKVGQLLGWGCHEIKEYVDNFFRGKADSALGMHAAELLLSSQ
HLLAMSSLPALCNICCICLEHLLLESRDPGRTAIPKERGSETRRKAGEKEDKGVQSEDPG
EGSEDMMMDGTNGRAQLLLTQAQIPSTLTQVYLTVLGSFLYSDPDTRGSNDELITTRLPQ
SILGQYRSELCELTQLAWKGLEDGKILFMEEDISQDVLKFSIRTGLISQVELRREDGMLV
NSYCFTHLTLQEFLAALRVMTSADVSDTQLKKRFSLRTRWTTKSDQRTVFTDSLHLFLCG
LASPQCTSALVQLARTPGGKGGQSWVQRRQSLVLKLLKNLCHSNTLTGPKILELCHCVQE
SQDHQLAKQVVGTRPTLELRNIRLLPNDIDALAFVVNSVGDNGIGLDFGACSMELECLDV
LPRCQYIQHLSFRSRKYDDKFAEKLSSILPKFTNLRKLEFCGASLTATGATSLASALPSC
PGITELNLSDNHLKDGGIKHIADIFTKQPRLVLVKLGRNNSSLEAVDYLIGKMSLCLNIQ
QVHADGRKELSVTFSQNSDLHSHKKKSEPTISLLNQKWSKADMQKLAKSLAHCPALSVLN
MSGSHLDVETLKTLTQYLPEINVTKKIIANDSCLTVEGLVILTALLSDCPAVVELHIRLQ
SPVQVSIVFSGGRQKTANEESKLLCLSWCGLLPSHLERVWRSLGTSPDLTLLDLSSNCFG
NKGLRKLLDVLPGLSSIQEINASNNGIGMEGVLMLAGALCSHNNLTQIHISDGDSVILKF
CPDKREDKQQQKIFRINNNKLLPSNITTLCRRLVQCRSLLELDLSHCSLTDKAIDNLMKV
LPKMTSLQRLNVSHSITSTTGALVLIRCLTVSQQVTSVELRPQTESFIQFDSLKAEQASC
RLTHCSLKGDNLERLLQILQQGPQLSDLDLSSNQMEDEGVKHFVDSLQQHKITSYVNLSK
NGLTQQGLLDVANTLCTFDNVSGVEVSLGAEERCLIWFTQHESFVKTLSIRDSSLERDHL
VRLAEILSICPSPTKLEFKNNSLQSDWIEDFVKLLNSSQRGFSINIEEHWIRSEEAVSLL
CRCLDLSSNIHTIRVHHNTLHLSLMKSTEVTSISLTDCAVEGYQLASMKSIILRCPLLTE
LDFSLNSLGIEGAEFLCSVLPSLPNLTSLSIGSKEASVTVVEKLSEALLQATSIQCLNLS
GHMISDTAAQIMTKMWPCLRSLNLSHCEWSASGGLQLIKALGECVSLEGLCLDCLRLNEE
SRMCLAQALRKIKSIRSLKLNKIDTAMGPLQADSVLDLLAAMEGLTRMQEIELEGWRMAD
RGIEELTRLLPVWTELRKISLSKNLISDQSGDMLLEALNSCTHLEELYLPSNSLGDLTAA
RMALVLPSLTYITVLDISENRIGYEGSVSLSKAIMCMNNLTKIYLTSVGTPELCAVAASL
AHCPLIQDVGLGWNNCGDKVAVELARVMPLCQKLTRLDLESNAVSVSGAEALVRALQSCP
ALELIRLWRNKVSPGEAQRLSLRERRLNFSST
NT seq
5679 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggaggtttttcctgacgccgaaaatgtgaactccgtcttggctcaggaatcc
tcagaacttctccacatccttagcggtcagtcacccgtagtcatcatgaaattgtgccaa
atgatgcccagttatgctggttgggacatcaacctggcctccagtatcccccctgcagca
gcagtaacagaacacatcaaagctgttttggagtactttagggtggccaaagctgaagat
tgccgcaacttccttcagagcatgtgtatcctgtgtgagaacatccccatgcacctggag
tccaggctcatgtcagtggctggatatgaaaatagtgcttgcgaacattccagttccagt
gtgacgggcgggaagtcgtcatcgccgccttcagagcagctcgtcaaacggccacggatt
gattactggccgcagtacaaagctgcagtgatgcttttccagaagaggaggtgggagcga
ctcagtgagcgcctggtgagtgaggtccagctggagaatgtgtgggtcagcctaagaacg
gcaaacagaggcagggacagacctgatcaaacccctggatcagcagacaaagggggcaga
acaccagagcctgatggggattatggggcaatggattccagagtgacattggagaccttt
ctccagggatgtgcggggaaggtgacagttctcgttggcccagctggatcaggaaaaact
ctgctgatgtcttgtttaggacaacactgggcacagggactaggccctgtcccttcatct
tacctgtttgtcctgctggagtttcgtcagctcaacctacggtcccaacctctctccctg
tctgatctgctattccgacactacgtccccatgaaagagggtgatcacaaaaaggaggcc
attgtggattacctcctctccaatccagaacaaagctgttgggtgcttgatggctatgat
gagtttcacagcaaactcaccaaacaagaggtgcagagagagctactggacccagaaagg
cctttgcccgttgcagacctcatatcagggctgttaaatcgccagcttcttccaggatgt
actgtgatggtgacctgccgtgtacgcgatgtcatcgatttggaaggcgtatcagataaa
gtcgggcagctgctgggttggggctgccatgagatcaaggagtatgtggacaactttttt
agaggaaaagcagactcagctcttgggatgcatgcagcagaactccttctttccagtcaa
cacctactagccatgtcatccctccctgctctctgcaacatctgctgcatctgtctggag
catttactgctggaaagtagagacccaggaaggacggcgatccctaaagaaagaggaagc
gagacaaggagaaaagcgggagaaaaagaagataaaggagtacagagtgaagatccaggc
gaaggtagtgaagacatgatgatggatggaacaaatggtagagcccagctacttctcaca
caagcccagataccctcgacactcacacaggtctacctcactgttctcggatcctttctg
tacagtgaccctgatacaagaggaagcaatgacgagctgattaccacgagacttccacag
agtattctgggtcagtatcgatccgagttgtgcgagctgactcagctggcctggaaaggc
ttagaggatggcaaaatcctcttcatggaagaagacatttctcaggatgttttgaagttt
tcaatcaggacaggactcatttcacaggtggagctcagacgtgaggatgggatgcttgtc
aactcctactgcttcactcatctgactttacaggagtttttggctgcactcagagtcatg
accagtgctgatgttagtgacacgcagctcaagaagagattcagtctgagaactcgctgg
acgaccaagtcagaccagaggacagtctttactgactccctgcacctgtttttatgtggt
ctggcctccccacaatgcacttcagccttagttcaattagccaggacccctggtggaaaa
ggaggccaaagttgggtacaaagacgacaaagccttgttctgaaactgctaaaaaacctt
tgtcacagcaacaccctgactggaccaaagatattggagctttgccactgtgttcaggag
agccaggaccaccaactagctaagcaggttgtgggtacgagacccaccttggagctgcgc
aacatccggctactacctaatgatattgatgctctggcttttgtagttaactcagtaggt
gataatggcattggtttggactttggggcgtgctcaatggagttggagtgtctagatgtc
ctgcccaggtgtcagtacattcagcaccttagttttcgcagccgcaagtatgacgacaag
tttgctgagaagttgtcctccattttgccaaaattcacaaacctgaggaaactagagttt
tgtggtgccagtttgactgccacaggagcgactagtttggcctctgccttaccgagctgt
ccaggcatcactgaactcaacctgagtgacaaccatctgaaagacggagggatcaaacac
atagctgatatttttaccaaacaaccaagactggttttggtgaagctgggtcgaaacaac
agctctctggaagccgtggactatctcatcggaaaaatgtctttgtgcttgaacatccag
caggttcatgcagatgggaggaaggaattgtcagtcactttctcccaaaactctgattta
cacagccataaaaaaaagtctgaaccaacaatcagcttgttaaaccagaaatggagcaag
gctgatatgcaaaaacttgcaaagtcattggcacattgccccgccttgtctgtcctgaat
atgtctggaagccacttggatgttgaaactctgaagacactgactcagtatttgccggag
atcaacgtcaccaaaaagatcattgcgaatgacagctgcttaacagtggagggtttggtg
attctgacggccctgttgtctgattgtcctgctgtggtggagcttcatatcagactacag
agtcctgttcaggtgtccatagtgttttctggagggagacaaaaaactgctaatgaagaa
tcaaaactgctctgcctcagctggtgtggtctgctgccgagtcatctggagagagtgtgg
aggagtttgggaacctcccctgatctcactttgctggatctgtctagtaactgttttggc
aacaaaggtctgaggaaactgttggacgtcctgcccggtcttagtagcatccaggaaata
aatgccagtaacaatgggattggcatggaaggagtgttgatgctggctggtgctttgtgc
tcccataacaacttaacacaaatccacatcagtgatggagattcagtgatcctgaagttc
tgccctgacaaaagggaagacaaacagcagcaaaagatattcaggataaacaacaacaaa
ctcctaccatccaatataaccacactttgtagacgattggtccagtgtcgctcccttttg
gagttagatttgtctcactgctcattgacggacaaggctatcgataatctgatgaaagtc
ctgccaaagatgacgtcactgcagaggctcaatgtcagccacagcatcacatcaacaact
ggagcactggtgttgatcagatgtttgactgtcagtcagcaagttacctcagtggagctc
aggcctcagactgaatcattcatccagtttgacagtttgaaagcagaacaagcaagctgc
aggttaactcactgtagcctgaaaggtgacaacttggagagactgctccagatcctacag
cagggcccccaactgtctgacctggatttatcaagtaaccaaatggaagatgagggagtg
aaacattttgttgattctctacaacagcataaaatcaccagctatgtcaatttgagcaaa
aatggcctgacgcagcaggggctgctggatgtggccaacactctgtgtacatttgacaac
gtctcaggtgtagaagtcagtttgggagcagaggaaaggtgtctgatctggtttacacaa
catgaaagttttgtgaaaacgctgagtatcagagatagtagtttggaacgtgaccatctg
gtgagattagcagagatcttgtctatctgtcccagtccaaccaaactggagttcaagaac
aattctctgcaatctgattggatagaagactttgtgaaactgttaaacagcagtcagaga
ggattcagcatcaatattgaggaacattggatcagatctgaggaagctgtgagtctgttg
tgtcgctgtctggatctcagcagcaacatacacactatcagggttcatcacaacacgcta
catctgtctttgatgaagtccactgaagtgacctcaatcagcctcacggactgtgcagta
gaggggtatcagcttgcatctatgaagagcatcatcctgaggtgtcctttactgacagag
ctggatttttccctcaacagcctgggcattgagggagctgagtttctctgttctgtcctg
ccgtcgctgccaaatctcacttctctcagtattggctccaaggaggcttctgtgactgtg
gttgagaagctgtcagaggccttgctgcaggctacatccattcagtgcttaaatctgtca
ggtcatatgattagtgacacagctgcccagattatgaccaaaatgtggccttgcctaaga
tcactcaatctgtctcactgtgagtggtcagcgtctggagggctgcagctcatcaaagca
ctgggagagtgtgtcagtctggagggcctttgtctggactgcttgcggctgaacgaggag
agcaggatgtgcctggcacaagcactaaggaaaattaaatctatacgcagtctcaagcta
aataagattgacacagcaatgggaccattacaagcagacagtgtgctagatctcctagct
gctatggagggcctcacacgaatgcaggagatagagttggagggctggaggatggctgat
agaggaatagaagagctgaccagactccttcctgtctggacggagctcagaaagatcagt
ctctcaaagaaccttatcagcgaccaatcaggagacatgctactggaggcgttgaacagc
tgcactcacctggaagagctctatctgcctagcaacagtctcggtgatcttactgctgcc
aggatggctcttgttctaccatcactgacatacatcactgtgctggatatttcagagaac
aggattggatatgaaggatcagtgagtctgtccaaagcaataatgtgcatgaacaacctc
acaaagatctatctgacctctgttgggactccagagctgtgtgctgtagctgccagtctg
gcccactgtcccctcatacaggatgtgggtctgggatggaataattgtggtgataaagtg
gcagtggagctggccagagttatgcctctctgtcagaagctgaccagattagatctggag
tcaaacgctgtgagtgtttctggagcggaggccctggttagagccttacagtcctgtcct
gctctggagctcatcaggctgtggaggaacaaggtctcccccggtgaagcccagaggctc
agtctgagggagaggagactgaatttctcatccacctaa
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