Anoplopoma fimbria (sablefish): 129108002
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Entry
129108002 CDS
T09102
Symbol
acanb
Name
(RefSeq) aggrecan core protein
KO
K06792
aggrecan 1
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
afb00535
]
129108002 (acanb)
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129108002 (acanb)
04091 Lectins [BR:
afb04091
]
129108002 (acanb)
Proteoglycans [BR:
afb00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
129108002 (acanb)
Glycosaminoglycan binding proteins [BR:
afb00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
129108002 (acanb)
Lectins [BR:
afb04091
]
C-Type lectins
Lecticans
129108002 (acanb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
Ig_3
I-set
ig
Ig_CD22
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
129108002
NCBI-ProteinID:
XP_054475599
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All DBs
Position
19:23555332..23571087
Genome browser
AA seq
1365 aa
AA seq
DB search
MQQLIDMNDGRSERPLESLAWELWSINGNHDPLLLLCVSLPLILATVTFELENHDDMDGS
LRVSIPMEMPLRPLLGSKVVVPCYFQDNTVNDPGAPTLAPLSHRIKWSYVTKEKVTTILV
ASEGKVQVETEYLDRVTMINYPLVSTDATLEITELRSKDSGTYRCEVMHGIEDNYDMVDI
QVQGIVFHYRAISTRYTLTFEKAKAACIQNSATIATPAQLQAAYDDGYHQCDAGWLSDQT
VRYPIHEPRERCFGDKEDFPGVRTYGVRDVNETYDVYCFAEKLSGRVFYSMSVEKFSFYE
AGDQCGKLGARLATTGELYLAWKDGMDVCNAGWLADRSVRYPINIARPQCGGGLLGVRTV
YLFANQTGYPYPDSRYDAVCFQAGDVPVRTTPFPDIIRMTPAPEMYPGLTPSVGEEIKRG
GVDTFTPLPVPPSMTDVDTAMAPTGVVFHYRPITGRYTLTFVEAQQACQSVGAVIASSLQ
LQAAFEKGLHQCDAGWLCDQTVRYPIVSPRDNCAGNLPLLPGVRSYGLRPANERYDVFCY
VERLQGEVFFTSDYDSFSYEEAVQHCQKLNTTLATTGQLFSAWNQGLDKCRPGWLLDRSV
RYPITTPRSHCGGGQVGVHIIYAYPNQTGFPDEHSRYDAYCFKAEVPVVHFENETSVNLT
IDVDVDVDVDVINKTTVTFDSFAPTVRPIFPTVPVDVSGSGSADHSASGESSGESGTSGA
FGSSGTSGDASGTSGDASGTSGDASGTSGDASGTIVDASGTSGDASGTSGDASGSGENVI
FSGSPDVFSGEQSASGGPQEAEGGSAVIVTSGEFGSASGSGEVVDSQHSGFGVSGSGSIS
GSGDISGSGGDSVIIMVDGMMEEVSKTHQKPSEQELGQGGIDTSGSFLESSTYGSGALSG
SGSGGFSGISFVDHSAVDLTVQPSGEQEVSGYRPSGSGFHSGFPSGFPSGFPSGVSGSAS
GDFILHRGDVIYLTDNDMMEVTARPEVRHPEQGRGVVEISGGGSGSGIHHEFRGTSDEIL
HFSGSGAPHEKPTADELSVALPPGSQTTYTEYISGLGLSGLGEEGQESLAGHTVHVVTPE
AAYTSPTTAPSVSLATPAVVQQPELVEALVDPCVPNPCSSGTCSVQGELAVCQCPTGFTG
EDCSTPVQGCAEGWLEFMGNCYLHFAERDTWSEAEQRCQEVNAHLVSIGSQEEQQFVNSN
GQDYMWIGLNDKDVQNEFHWTDGSPLSFENWRPNQPDNYFNSEEDCVVMIWHEGGQWNDV
PCNYHLPFTCKTGPVMCGAPPEVEHGRPMGSGREHYPANSIVRYQCDAGYTQRHLPVIRC
MPDGQWEQPQVECTEAGANSNRLHKRSLRRRSKAVGSRQEQRKLH
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atgcaacagctgatagacatgaatgatggcaggagtgagaggcccctggagtcgttggcc
tgggagctttggagcatcaacggtaaccatgaccccctgcttctgctgtgtgtgtccttg
cctctcatcttggcaacagttacatttgaacttgaaaaccatgacgacatggatggatca
ttgcgtgtcagcatccctatggagatgcctctccgtcctctgctgggcagcaaggtagtg
gtgccctgctacttccaggacaacacagtcaacgaccccggagccccgaccctcgccccg
ctctcccaccgcatcaaatggtcctacgtcaccaaggagaaagtcaccaccatcctggtg
gcgtccgaggggaaagttcaagtggagactgagtatttggacagggtgacaatgatcaac
tacccgctggtgtccaccgacgccaccctggagataacagagctgaggtccaaagattct
ggcacctaccgctgcgaggtgatgcacggcattgaggacaactatgacatggtggacatc
caggttcagggtatcgtgttccactaccgagccatctccacccgctacaccctgacgttc
gagaaggcgaaggccgcctgcatccagaacagtgcgaccatcgccactccagcccagctg
caggctgcctacgacgacggataccaccagtgcgatgctggatggctctccgatcagact
gtcaggtaccccatccatgagccacgggagcgttgctttggagacaaggaggacttcccc
ggcgtgagaacatacggtgtgagagatgtcaacgagacctacgacgtatactgctttgcc
gagaagctgtcaggcagggtcttctactccatgtctgtagagaagtttagcttctatgaa
gcaggagatcagtgcggcaaactgggtgcccgacttgccaccaccggagagctgtacctg
gcctggaaggacggcatggatgtgtgtaacgctggctggctggcggacaggagtgttcgc
tacccaatcaacatcgccaggcctcagtgtggaggaggactcctgggagtgagaaccgtc
tacctgttcgccaaccagacaggatacccctacccggactctcgctacgatgctgtctgc
ttccaagctggtgacgtgcccgtgaggaccactcctttcccggacatcatccgcatgaca
ccggcccctgagatgtatccgggcctcaccccctctgtgggagaggagatcaagcgtgga
ggagtcgacaccttcaccccactgcccgtaccgcccagtatgaccgacgtagatactgcc
atggctcccacaggtgttgtattccactaccgacccatcaccggtcggtacactctgacc
tttgtggaggctcagcaggcctgccagagtgttggggcagtcatcgctagctccctgcag
ctgcaggcagccttcgagaaaggcctgcaccaatgtgatgccggctggctatgcgaccag
actgtcaggtatcccatcgtgtcacccagagataactgtgctggtaatctgccactcctc
ccaggagtcagatcctacggcctgagaccagccaatgaacgttacgatgtattttgttat
gtggaacgtctccaaggtgaggtcttcttcaccagtgactatgacagcttctcctatgag
gaagctgtgcagcactgtcagaaactcaacacaaccttggccaccactgggcagctgttt
tctgcctggaaccaagggcttgacaagtgccgtccaggctggttgctggaccgcagcgtc
cgctacccgatcacaacccccaggtcacactgtggaggcggccaggtcggggtccacatt
atctacgcctacccaaaccagacaggatttcctgatgagcattcacgctacgacgcctac
tgttttaaagctgaagttcctgttgttcactttgaaaatgaaaccagtgtgaatctgaca
atcgatgttgatgtggatgttgatgtggatgtcatcaacaagacaacagtcacatttgat
tccttcgctcccacagtgagacccatctttcctacagtccctgttgatgtgtccggctct
ggttcagctgatcattcagccagcggagagagctcaggggagtccggtacctccggcgcc
ttcggcagctccggtaccagtggtgacgcctccgggaccagcggtgacgcctccgggacc
agcggtgatgcctccggtaccagcggtgacgcctctgggaccatcgttgacgcctccggt
accagtggtgacgcctccggtaccagcggtgacgcctccggctcaggagagaacgtcatc
ttcagcggaagccctgacgtcttctccggggaacagtccgcctctggaggcccgcaggag
gcagaagggggaagtgctgtcatcgtcacatctggcgaatttggtagtgcatctggatcc
ggggaggttgttgacagtcagcattctggcttcggtgtatctggatcaggttctatcagt
ggaagcggagacatcagtggtagtggaggagactcagtgatcatcatggtggatgggatg
atggaggaggtgtcgaaaactcaccaaaaacccagtgagcaggagttgggccagggaggc
attgataccagtgggtctttcttggaatcaagtacctacggatctggagctttgtccggg
tcgggctccggtggattttctggcatctcatttgtcgaccacagtgccgttgacctgaca
gtccagccgtctggtgagcaggaggtgtctggatatcgcccctctggatccgggttccac
agcggctttccaagtggttttccaagtggttttccatccggtgtctcaggctctgcctct
ggagactttatcctgcatcgtggtgatgtcatctacctaacagacaatgacatgatggag
gtgaccgcacggccggaagtacgccaccctgagcagggtcgtggggtggtggagatcagc
ggcggaggaagcgggtcagggatccatcatgaattcagaggcacttcggatgaaatcttg
catttctcgggaagcggagcccctcatgaaaaaccgaccgctgacgagctttccgtcgcc
ttgccccctggatcgcagacgacttacaccgagtacatttccggtctcggcctatcagga
ctcggggaggagggtcaggaaagccttgcaggccatacagtgcatgtagtgactccagag
gcagcctacaccagcccaaccacagcaccgtcagtgtcattagcaacccctgcagtagta
cagcagcctgaactcgtagaagccttggtagacccctgtgttccaaacccctgcagttca
ggaacctgctctgtgcagggagagctcgctgtgtgtcagtgtcctactggtttcactggt
gaagactgctcaacacctgtgcagggctgtgcggagggctggttggagttcatgggcaac
tgttacctccactttgctgagagagatacctggtctgaggctgagcaacgctgtcaggag
gtcaacgcccacctggttagcatcggctcccaggaggagcagcagtttgtcaactccaat
ggccaggactacatgtggattggactcaatgacaaagatgtgcagaatgagttccactgg
acagacggcagtcctctgagctttgagaactggaggccaaaccagccagataactacttc
aactctgaggaggattgtgtggtgatgatctggcacgagggcggacagtggaatgacgtg
ccctgcaactaccaccttcccttcacctgcaagaccggacctgtcatgtgcggcgctccc
cctgaggtggaacacggccggccgatgggcagcggcagagagcactaccccgccaactct
atagtccgctaccagtgtgacgcaggctacacgcagcgccacctgccggtcatacgctgc
atgccagacgggcagtgggagcagccacaagtggaatgtacagaagccggcgccaacagt
aacaggctacacaaaagatccctcaggagaagaagtaaagcggtcggcagccgacaggaa
cagaggaagctgcactga
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