Anoplopoma fimbria (sablefish): 129108018
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Entry
129108018 CDS
T09102
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
afb03000
]
129108018 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
afb03310
]
129108018 (roraa)
Transcription factors [BR:
afb03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
129108018 (roraa)
Nuclear receptors [BR:
afb03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
129108018 (roraa)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
129108018
NCBI-ProteinID:
XP_054475615
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Position
19:complement(1587356..1757088)
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AA seq
519 aa
AA seq
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METPPDPASDPGNSASEPATPLRETPVNLETLRKADHPAPVRRQTCSSTNRGISVTKKTH
TSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLIDRTSRNR
CQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQQQRDHQQQPGEAEPLTP
SYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDINGIKPEPI
CDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQMTWQAFL
QEEVESYQSKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVV
FVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSEDEIALFS
AFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTLRALCSRH
TEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atggagacccctccagatccagcgagcgacccgggcaacagcgcctcggagccggctacc
ccgctcagggaaaccccggtgaacctggagacgctccggaaagcggaccatccagccccg
gttcggaggcagacctgttcaagcaccaacagaggtatctcagtaacaaagaagacacat
acttctcaaatcgaaataattccctgcaagatctgtggagacaaatcatcaggcatccat
tacggcgtgataacatgtgaaggctgtaagggcttcttcaggaggagtcagcagagcaat
gcagcctactcctgcccccgtcagaagaactgcctgatcgaccgcaccagccgcaaccgc
tgccagcactgccggctgcagaagtgcctggcagtgggcatgtcacgagatgcggtgaag
tttggccgcatgtcgaagaagcagcgagacagcctgtacgctgaggtccagaagcaccgg
ctgcagcagcagcagcgtgaccaccaacaacagcctggagaggcggagccgctcacacct
agctatggcctctcagccaatggcctcacagagctccatgacgacctcagcggctacatg
gatggtcacacccctgacggcagcaaacccgactcggcggtaagcagcttctacctggac
atccagccatctcctgaccagtcaggcctggacatcaacggcatcaagccggagcccatc
tgcgactttgcccctggctctggcttcttcccttactgctccttcaccaacggagaaacc
tcccccaccgtgtctatggctgaactagagcacctggcccagaacatctccaagtcccac
atggagacatgtcagtacctgagggaggagctgcagcagatgacctggcaggccttcctg
caggaggaggtcgagagttaccagagcaagccccgggaagtcatgtggcagctgtgtgct
atcaaaataacagaggccattcagtatgtggtggagttcgccaagcgcatcgacggcttc
atggagctgtgtcagaatgatcagatagtgctgctgaaagcaggctctttggaagttgtg
tttgtcagaatgtgccgtgcctttgactcgcaaaacaacacagtctattttgatggaaag
tatgccggacccgatgtgttcaagtcattaggctgtgacgacttgatcagctccgtcttc
gagtttgggaaaaacttgtgttctatgcacctgtctgaggatgagatcgccctgttctcc
gcctttgtgttgatgtctgctgatcggtcttggctccaggagaaggtgaaggtggagaaa
ctccagcagaagatccaactggccctccagcacgtccttcagaagaaccacagagaggat
ggtatactaacaaagttgatatgcaaagtgtcgacactgcgagcgctgtgcagtaggcat
acagagaagcttacagctttcaaagcaatatacccagacattgtgcgtgcccacttcccc
cccttatacaaggagctgttcggatcagactttgagcagtccatgcccgttgacgggtag
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