Anoplopoma fimbria (sablefish): 129108024
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Entry
129108024 CDS
T09102
Symbol
lrrc4cb
Name
(RefSeq) leucine-rich repeat-containing protein 4C
KO
K07523
netrin-G1 ligand
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
129108024 (lrrc4cb)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
LRR_14
ig
V-set
LRR_9
Ig_2
LRRNT
Ig_6
Syndecan
Motif
Other DBs
NCBI-GeneID:
129108024
NCBI-ProteinID:
XP_054475628
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Position
2:complement(5389315..5391210)
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AA seq
631 aa
AA seq
DB search
MLNKMISSLQRQTMRGRRLKGALSNPLFVLLLALQILVVAGLVRAQTCPSVCSCSNQFSK
VICTRRSLRDVPDGISTNTRYLNLQDNLIQVIKVDSFKHLRHLEILQLSKNHIRNIEIGA
FNGLASLNTLELFDNRLTTIPNGAFEYLSKLKELWLRNNPIESIPSYAFNRVPSLRRLDL
GELKRLSYISDGAFKDLSNLRYLNLGMCNLKEIPNILPLVRLEELEMSGNQLSVVKPSAF
LGLVNLQKLWMMHAQVQTIERNSFDDLQSLVELNLAHNNLTFLPHDLFTPLHRLERVHLH
HNPWNCNCDILWLSWWLKETVPANTSCCARCHSPTVFKGRYIGELDHSYFQCDVPVIVEP
PSDLNVTEGMAAELKCRTSSLTSISWLTPNGSLVTHGAYKVRLSVLNDGTLNFTSVTMQD
TGTYTCMVSNTAGNISASAVLNVTSVENSGVTYFTTVTVETIETPGDDSQTPLPPFGWTS
SSTTRGTPVSTRTTERTYTIPVLDPDGEGALNGLDEVMKTTKIIIGCFVAITLMAAVLLV
IFYKMRKQHNQQDPDGPASSMEVITVEEELAGVAAMERHLSLPPLEHYNHYNTYKSSYHH
GPMLSTIHSSATQEPLLIQACSKDNVQETQI
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgctgaacaaaatgatctcctccctccagcgccagacaatgcgaggtcgtaggctgaag
ggggcgctgtccaaccccctctttgtgctgcttttggccctccagatcctggtggtggct
gggctggttcgcgctcagacctgtccttccgtctgctcatgcagcaatcagttcagcaaa
gtcatatgcacccgccgcagcctacgggacgtcccagatggcatttccaccaacacccgc
tacctgaacctccaggacaacctcatccaggtcatcaaggtggacagtttcaaacatctg
cgccatctggagatcctgcagctgagcaaaaaccacatccgcaacattgaaattggcgcc
ttcaatggactggccagcctcaacaccttggagctctttgataatcggcttacgacaatc
cccaatggagcattcgagtacttgtccaagctaaaggaattgtggctacggaacaacccc
atcgaaagtataccatcttatgccttcaaccgggtcccctcgctccgaaggctggatctg
ggggagctcaaacgtctctcctacatttcggacggagccttcaaggacttgagcaacctg
cgctacctgaacctggggatgtgcaacctcaaggagatccccaacatcttacccttggtc
aggcttgaggagctggaaatgtcaggaaaccagctctccgtcgtcaagcccagcgcattt
ttaggattagtgaacctccagaagctgtggatgatgcacgcccaggtccaaactatcgag
aggaattccttcgatgaccttcagtcactggtggagctcaacctggcgcacaacaacctc
acctttctaccacatgacctcttcacgccgttgcatcgcctggagagggtccacctccac
cacaacccttggaactgcaactgtgatatcctgtggctcagctggtggctgaaggagacg
gtacctgccaatactagctgctgcgcccggtgccattctcctacagtctttaaaggtcgc
tacattggggaactggaccacagctacttccagtgcgatgttcccgtcatcgtggagcca
cccagtgacttgaatgtgacggagggcatggctgcggagctaaaatgtcgtacgagctcg
ctcacatccatcagctggctcacgccaaacggctcgttggtgacacacggggcttataag
gtgcgtctgtctgtcctcaacgatgggacactgaactttactagcgtcacaatgcaggac
accgggacttacacctgtatggttagcaacacagcgggcaacatttctgcctctgctgtg
cttaatgtcacttctgtggaaaacagtggggtgacctattttaccacagtcaccgtggag
accattgagaccccgggggatgatagccaaacgccgcttcccccgtttggctggacgtca
tcgtccacgacgagaggtactcccgtttcaacaaggaccacagagcggacttacacaatt
ccagttcttgatccggatggagagggagccctcaatggcctggatgaggtgatgaaaacc
accaagattatcatcggctgcttcgtggccatcacgctcatggctgctgttctgctggtc
attttctacaagatgaggaagcagcacaaccagcaggatcccgatggccccgcgtcctcc
atggaggtcataacagttgaagaggagctcgcaggtgtcgctgccatggagaggcaccta
tcgctgccccctctggagcactacaaccactacaacacctacaagagctcctaccaccac
ggccctatgctcagtaccatacacagctcagccacacaggaacctttactgattcaagcc
tgctcaaaagacaatgtacaagagacccaaatctga
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