Anoplopoma fimbria (sablefish): 129108065
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Entry
129108065 CDS
T09102
Symbol
lamb4
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-4
KO
K06245
laminin, beta 4
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129108065 (lamb4)
04518 Integrin signaling
129108065 (lamb4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129108065 (lamb4)
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Ortholog
Paralog
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
LAMININ_IV_B
LAMB4
LAMB1
Motif
Other DBs
NCBI-GeneID:
129108065
NCBI-ProteinID:
XP_054475687
LinkDB
All DBs
Position
19:complement(29228256..29282056)
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AA seq
1803 aa
AA seq
DB search
MILIFFIVFLPAARLQDPQDRHDQCPGGSCNPQLGDLMLGRATQLSATSTCGLDGPQKYC
ILGYLEEEQKCFTCDSRLPYNRHGNPNSHRIENVITTFDPERKMKWWQSENGVHQVSVRL
DLETVFQFSHLVLTFKSFRPAAMLVERSKDFGRSWKVFRYFAEDCSLWFPSVSNRPAVSI
DDIVCDSRYSGSDPSTDGEVVLKALDPIFELENPYASNIQDLITLTNIRVNFTRLFTLGD
TLLGRRRRNPQDKYYYALYNMVVRGSCFCNGHASQCTPVDGGRGDVFAQTGMVHGRCVCQ
HNTAGENCERCQDFHHDSRWRSGGENTANTCKRCNCNGHSDSCHFDATRFEATGRLSGGV
CEDCRHDRIGSQCERCRPFLYQDPQRETDDPHACIPCDCDPAGSEEGGLCDALSGKCVCK
ENVEGQRCDQCKYGFFNLRRDDPTGCQVCRCHVLGSVGSCDQLTGSCGCVHLASGPLCDQ
CLAGFWGLGNSVFRCSPCDCDVGGAHSNTCSPEDGQCHCLPNMVGRRCSDPAPGYFLPPL
DYFLYEAELAAPLHGGTSSSPSTTPPPSPSSSSSLLDPVVLPQCKKYYREQGYDFKFTNG
RLVLVRRTRHLARWRRQGQQNSLPLDQGHALQIIPRQRKADQPITWTGLGLVRVFEGEGL
RFTVDNLPSTMDYQLVIRYESESPLDWLASVSIVTVSLVPGGCSSDPIGSKTLILPGNSR
GGILDRLVCLNAGGQYFVDVVFNKQSGSDGLSSSHILIDSLGLIPSNKAVQDFCSQSDLD
SFRHFHCIGLAVELRPQETLPQVCEGLIKSMSARIHNGGVLCRCNVVGSLGPSCSKLGGV
CECKPNVIGRCCDTCAPLTFGFGPDGCKPCECDPRGSVSELCDQVRGQCVCRSEVTGQRC
DRCQTAFWGFPSCQPCQCNKLSEVCDEQTGECLSCREHATGPMCERCVEGYYGNPVSSQP
CALPVSRSSKQWTIFATSCQHDPQSLSLTCNCREGHTGPRCDRCSPGFYGDLGLPGASCE
ECPCNNNINPGDPNACDRLTGECQRCLYNTMGPRCQDCKPGYYGNALDQDCKECSCDRRG
TEVTQCPLGSPCFCNSRTGQCPCRTGVVGLLCDQCVDGYWNLHGASGCQACSCDSVNSFS
NICNKVTGQCPCRPEFGGRQCDECGENHFGNPDLQCISCDCNVEGTERPSCDPETGECIC
RVGVTGIFCDECAHGYHSVFPACEECHPCTALWSRDVTDVKRAALMMRTFIPHHGYDNTW
PGNSRHQQQMLKMHSSLDSVTDLMGLSLPKLEKLEKLCAKMGKMQDAIDPNVILIDLSPL
LNTEIDNIRLEFKKLQNNLKSKLIEDPDDEDEYPDELLNEIKKLHEAFMLGEKRLRNANK
ALEDSMDTRQEAKHKLSMCSSRGDMASLEKKVQELSVLKLNRVICGGPGLEDCSGCGGAL
CGLDSGKRKCGGPNCDGVIPVSQKTSETAERVKQQLITLPFSLQESKNKINDAKQQAQDT
KDQAKDLQDRINKNIDSLKGEKNKTKELIQRVKDYLIDEMVPPEDIKKMAQAVLDIHLPK
SPNQIRSMINDINNLLSNTNNPPKNLEEPTKTAQTLRQKAKELKEQTKNIDVTEISRDIY
EAEEAQDKANDDLDTGSQHKDIAKDRIQDMKKKLDDIETKLMNRRPEDLQDEIEALRRKT
EQNREAARDAREAADSALNQTTDTEPELDDVMRLFELLNQKKSNETVEGEAGERLRKMME
EAKKMKDQVEDKLLQLQDLEEKIQLLIKNKEAKAAEVSMLLETVDSIRQEISKRAEGYAI
CTS
NT seq
5412 nt
NT seq
+upstream
nt +downstream
nt
atgatcttaattttcttcatagtttttcttccagcagctcgactccaggatccccaggat
cgccatgaccagtgtcccggcggctcctgtaatccccagcttggtgacttgatgttgggt
cgagcgactcagctgtcagccacatccacctgtggcctggatggaccacagaaatactgc
atccttggatacctggaggaggagcaaaaatgtttcacatgtgactctcgtctgccttac
aatcgtcatggaaatcccaacagccaccgcattgagaacgtcattacaaccttcgaccct
gagagaaaaatgaagtggtggcagtctgagaacggagttcatcaggtcagtgtccggctc
gatctggagaccgtgttccagttcagtcatctggttctcaccttcaagagtttccgtcca
gcggccatgttggttgagcgatcaaaagatttcggacggagctggaaggtttttcgttac
tttgcagaagattgttcactttggttcccttctgtttctaatcggccagccgtaagcatt
gacgacatcgtctgtgacagcagatactctggatcagatccgtcaaccgacggagaggtg
gtgctgaaagctctagatcccatctttgaattagaaaacccgtacgcatcgaacatccaa
gatctcatcaccctgacaaatatccgtgttaacttcactcgtctcttcaccttgggcgac
actctgctgggtcgaagacgcaggaaccctcaggacaaatattactacgctctatacaac
atggtggtcagaggtagctgcttctgtaacggacatgccagccagtgtacaccagtggac
ggaggacgaggggacgtcttcgctcagactggcatggttcacggccgatgtgtttgtcag
cacaatacagctggagagaactgtgagagatgtcaggactttcaccacgactcccgctgg
aggtctggaggggaaaacacagccaacacctgcaagagatgcaactgtaacggtcactcg
gactcttgtcacttcgacgccactcgttttgaagcgacaggcaggctgagcggcggcgtg
tgtgaagactgccgccatgacaggatcgggtctcagtgtgaacgatgtcggccttttctg
tatcaagatccacaaagagaaacagacgacccgcacgcctgcataccatgtgactgcgac
ccagctggttcagaggaaggaggtctgtgtgacgctctgagcggcaaatgtgtctgtaaa
gaaaacgtggagggtcaacgctgcgatcaatgcaaatatggcttcttcaatctgagacgg
gacgaccccaccggctgtcaggtgtgcaggtgccatgttttaggaagtgttgggtcatgt
gatcagctgacaggaagttgtggatgtgtccatttggccagcggtcctctgtgtgatcaa
tgtctggcaggtttctggggtttgggaaactccgtgttcagatgttcaccatgtgactgt
gatgttggaggagctcacagcaacacgtgttctccggaggatggacaatgtcattgttta
cccaacatggtgggtcggcgctgctctgaccccgccccagggtacttcctgcctccactg
gactacttcctgtacgaggcagagctcgccgctccattgcatggaggaacctcttcttct
ccttctactactcctcctccttcaccgtcttcttcatcttctctgttggacccggttgtt
ttacctcagtgtaagaagtattacagagagcagggttacgactttaagttcacgaacgga
agactggttctggttcggaggactcgacacctcgcccgctggcggagacagggacagcag
aacagccttcctctggatcagggtcatgcccttcagatcattccccgtcagaggaaagct
gatcagccgatcacctggaccggcctgggattggtcagagtgttcgagggggaggggctt
aggttcactgtggacaacctcccatcaacgatggattaccagctggttattcgctacgag
tccgagtctccgttggattggctggcttcagtcagcatcgtcacagtgtcactggttccc
ggcggctgcagcagtgacccaatcggaagtaaaactctaattcttcctggaaactccaga
gggggtattctcgaccgtctggtgtgtctaaatgcaggcggtcagtactttgtggatgtt
gtctttaacaaacagtccggatcagacggcctctccagctcacacatactgatcgactcg
ttgggtctgattcccagcaacaaggctgtccaagatttctgctcccagagtgaccttgac
tctttccgccactttcactgcattggattggctgttgagctccgcccacaagagacgctg
ccacaagtctgtgagggactcatcaagagcatgtcagcacgaatacacaacggaggtgtt
ctctgcaggtgtaacgttgttggctctcttggaccatcctgcagtaaactgggaggtgtc
tgtgaatgtaagcccaatgtgattggccgttgctgtgatacatgtgcaccactgacattt
ggttttggacccgatggctgcaaaccatgtgagtgtgaccctcgtggttcggtgtcagag
ctttgcgatcaggtcagaggtcaatgtgtgtgtcgttcagaggtcacaggtcaacgctgc
gatcgctgtcaaacagcattctggggtttcccttcctgtcaaccctgtcaatgtaacaag
ctgtcggaagtgtgtgacgaacaaaccggagagtgtctgagctgcagggagcacgccacc
ggaccaatgtgtgaaaggtgtgtggagggttactatggtaaccctgtctccagtcagccc
tgtgccctgcctgtgtccagaagttccaaacagtggacgattttcgccacttcatgccaa
cacgacccacaatccctcagtctcacctgtaactgcagggagggacacacaggtccacgc
tgcgatagatgcagccctggtttctatggcgacttggggttgccaggtgccagctgtgag
gagtgtccctgcaacaacaacataaacccgggtgaccccaacgcatgcgaccgcctaaca
ggagaatgtcagcgctgcctctacaacacaatgggaccacgctgccaagactgcaaacct
ggttactacggcaacgccctggaccaagattgcaaagagtgctcttgtgaccggcggggg
acagaggtgactcagtgtcctcttgggagtccttgtttctgtaattcaaggacaggacag
tgtccctgcaggacgggggtggtgggactcctttgtgaccagtgtgtggacggatactgg
aacctgcacggtgcttcggggtgtcaagcctgcagctgtgattctgttaactccttctcc
aacatctgcaacaaggtgacgggacagtgtccatgtcgtcctgagtttggaggaagacag
tgtgacgagtgtggagaaaatcattttgggaatccggacctgcagtgtatctcttgtgac
tgtaacgttgagggaactgagcgtccgtcatgtgaccctgaaaccggcgagtgcatctgt
cgggtcggtgtcaccggcatcttctgtgatgagtgcgcccatggctaccactcagtgttc
ccggcctgcgaggagtgccatccatgcaccgctctctggtccagagacgtcaccgatgtc
aagcgagcggccctgatgatgagaaccttcattcctcaccatggctatgacaacacctgg
cccggcaacagtcgccaccagcaacagatgctgaagatgcactccagtttggacagcgta
accgacttgatgggactctccctgccaaagctggagaagctggaaaaactgtgtgcaaag
atggggaagatgcaagacgccattgacccgaatgtgatactgatcgacctgtctcctctc
ctaaacactgaaatcgacaacattcgtctggagttcaagaagctgcagaacaacttgaaa
tcaaaactcatcgaggatccggacgatgaagacgaatacccggacgagctgctgaatgaa
atcaaaaagcttcatgaagccttcatgttgggcgagaagagactgagaaatgccaacaaa
gctctggaggactccatggacaccagacaggaagccaaacataaactgagcatgtgcagc
agcagaggagacatggcgtcgctggagaagaaggtccaagagctaagcgtgctcaagctc
aaccgagtgatctgtggaggaccaggtctggaggactgttcaggatgtggtggagctctg
tgtggtctggattcgggaaaaaggaaatgtggaggtccaaactgtgacggagtcattcca
gtcagtcagaaaacttcagagacagcagagagagtgaagcagcaactcatcactctccca
ttcagtctgcaggagtccaagaacaagatcaatgatgccaaacagcaagctcaggacacc
aaagaccaggccaaagacctccaggaccggatcaacaaaaacatagactctctcaaggga
gagaaaaataaaaccaaggagctcatccagcgagtcaaagattacctcatagatgagatg
gttcctccagaggacatcaagaaaatggcccaagctgttctggacatccacctgccaaaa
tcaccaaatcagatccggtcaatgatcaatgacatcaataatctgctgtccaacacgaac
aacccccccaagaacctagaggagcccacaaagactgcccagaccctgcggcagaaagct
aaggaactcaaggagcagacaaagaacattgatgtgacagagatcagcagagatatttat
gaagcagaggaagctcaggataaagccaacgacgacctggacacaggcagccaacacaaa
gacatcgccaaagaccgaatccaagacatgaaaaaaaaactagacgacatcgagacaaag
ctgatgaatcgtcgacctgaagatctgcaggacgagatcgaagccctgaggaggaaaact
gaacagaacagagaggcggccagagacgcccgagaggctgcagactctgctttaaaccag
actactgacacagaaccagagctggatgatgtgatgaggctctttgagctcctgaaccag
aaaaagtccaatgagacagttgaaggtgaagctggagaacgactgaggaagatgatggag
gaggcaaagaagatgaaggatcaggtggaggacaaactcctacagctacaagatctggag
gagaagatccagctgctgatcaagaataaagaggccaaagcagctgaggtctccatgttg
ttagaaactgtggattcaattagacaggaaatctccaaacgagctgaaggatacgccatc
tgtacttcataa
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