Anoplopoma fimbria (sablefish): 129108170
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Entry
129108170 CDS
T09102
Symbol
tdrd12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12 isoform X1
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
afb03036
]
129108170 (tdrd12)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
129108170 (tdrd12)
Chromosome and associated proteins [BR:
afb03036
]
Eukaryotic type
Gene silencing
piRNA pathway
129108170 (tdrd12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
CS
Helicase_C
Motif
Other DBs
NCBI-GeneID:
129108170
NCBI-ProteinID:
XP_054475840
LinkDB
All DBs
Position
19:27408142..27428101
Genome browser
AA seq
1434 aa
AA seq
DB search
MLKIPTLTVESPSCLWGRVVRGPGSDVETTDQYDRLLAQMNLFYHDVTQDLRKLKPTSLE
EGQVCVVYWSVMKSWCRAVVESIIMDSVSCQARCLLVDHGERLVVPSEQIRIAMQTFLQL
PFWVRKFHLAGIKPTTLRVSVHEEKAGLIPSTQWDSSATLYLHNLLQASTRAEAVLLESE
SDSTSVELYLTVGNVKICVNDDLVAKKFAYYIGGLDEVDRLPFMLSSSILTQTVCTTSIK
PTAQTTQPPQTISSSPGSAVGAGDWLTAPSTPQRRQQGLKASEEGGGSKVTDQQNGSDSA
AAESDSSEETDSSLAAALTKDLSLFRFLKFLNPGSSFQQAAPTVSQHEEIKDSRPEETTA
ASRNFTGQEVLFPLNSEPVTLLNQALLNTSGAEGVCESSQDEYLEDEDTSSSSRSVESGR
AEKTWRNEEDWACSRLLEWLNPEPLNPDPDAADDSAAPSDPRRSGILVHSVFPVEPCTSL
DDAPLTDALRWVLRKKQHSTLTPAERYSWPAVARGCNTVIVSHNADQPLSYVAPLLTHIL
LNSIFTSLTSSTGPIVVLLCPGWEKAQAVYDLLEEMKVAQVLHPVILLLGVGKDEAKAVR
IPKNCLLLVTTPFSLVRLLSCHCFLFLRLYHLVLDEADQLFTLAPDQMATILQHFQKVTS
SEEKASCPQQLVAVAKRWTSHMEGLVANHMPYPCIVMTVPEEAALYGNVQQIILMTLESS
KLSVLLGALDFNPDVGQKTLIVANSAQEVEDVFKAVSNKSAFCLKTHEGLTHQFDFVIQQ
WRKDVGPGTHVILVTTSECLKCLGVRDATCVVHYGFPTSPKLFGGRLSCMAENFRNLSER
VSSEDQTGSRRRLSRSVLLISERNACHVVGVLRYLGRTNALLPPELLSFAQGVHVAREDQ
KTNRPLCRYLKSFGVCRDSSVCPDRHRFISQLDQSVLPASGVIEVVPLYIKTASVFYGRV
VQKEDGGGFRSMASEMTAYYADRKPGAKELLEGGLYAVQEDELFHRVKILSVPERGDRLF
FSVFVRFIDVGKEEEVKSHQILQLPDQFHSLPGQAVEIVVCRVKPVDAETDWHPKVTRAI
NQKIRGLQHRARAVFSLGNTVFVDPMVRLTQVPGMKTVINEYSVQSEILNTGMGVSNQEH
LDLLRALCQQDEVGGSKEAGHISGSGDGPASLEVRIKAEVEVLAEAVRAVEVSSMLDDLP
LLEPCEPLSPVSPTIQSPVPEPQAPPAANLHLVPVCDKKPLLDRQINTHTADLRSAEQIM
RIRDGELRPACLNLAGNGDDQSNRQQVFSTNETDCDDSTKSFHPPARWYQTSDSVIVTVK
LRNPESQRCDFYPDRVVYSCRANARTYRADLQLHGNIAAERCCWEMKSNEPVLKLVKQQQ
GYWERLLRNKNIFVSYDMEHFEEEEDRTPNGLYFVEDTGKDNWYVNSESGSESD
NT seq
4305 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagatacccacgctgacggttgagagcccgtcctgcctctggggtcgggttgtt
cggggtcccggcagtgacgtggagaccacagaccagtacgacagactgctggctcagatg
aacctcttctaccacgacgtcactcaggacctgcgcaagctgaagcccacatcgttagag
gagggacaggtgtgtgtggtgtactggtcggtgatgaagtcgtggtgtcgggccgtggtg
gagtcgatcattatggactcggtgtcctgtcaggctcgctgcctccttgtggaccacgga
gaacgtctcgtcgtcccctcagaacagatccgaatcgctatgcagactttcctccagctg
cccttctgggtgagaaagttccacctggcaggaatcaaaccaacaaccctgcgggtttcc
gtccacgaggagaaggcagggctcattccctccactcagtgggacagctctgctacactc
tacctgcacaacctgctacaagcgtcgactcgggccgaggccgtgttgctcgaatccgag
tcagactccacctccgttgagctctacctgaccgtagggaacgtcaagatctgtgtgaac
gacgatctagtggccaagaagtttgcgtattacatcggcggtctggacgaggtggaccga
cttcccttcatgttgtcttccagcatcttaacccaaaccgtctgcacgacctcaatcaag
ccaacggcacaaacaacccaaccacctcaaacgatttcttcaagccctggttcggcagtt
ggagccggtgattggctgacggctccctccacacctcagagacgacaacaggggctgaag
gcctctgaggaaggcggcgggtcaaaggtcacggaccaacagaatggctcagactctgct
gctgcagagagcgactcttcggaggaaacagactcgtctctggctgcagctctgaccaaa
gacctcagtctgttcaggttcctgaagtttctgaatcctggcagcagcttccagcaggcg
gctcccactgtcagtcagcatgaagagataaaagacagtcgacctgaagagacgactgcg
gcctccagaaacttcacaggacaggaagtattattccctctgaacagtgagcctgtaaca
ctgctcaatcaagctttgctcaatacgagtggagctgaaggtgtttgtgagagcagtcag
gatgaatatctggaggatgaagatacaagcagttcgagcagatcagtggagtcgggtcga
gcagagaagacgtggaggaacgaagaggactgggcctgttcacgccttttagagtggttg
aacccggagccgctgaaccccgatccagacgctgcagacgactcggctgctcccagtgat
cccaggaggagtgggattctggtgcactctgtcttcccagtggagccctgcaccagcctg
gacgatgcccccctcacagacgccctccgctgggtgttgcgtaagaagcagcacagcact
ctgactccagctgagcgttacagctggccagctgtggcccgaggatgcaacaccgtcatc
gtctcccacaacgccgaccagcctctcagctacgtcgccccgctcctcacccacatcctg
ctcaactccatcttcacctccctcacctccagcacagggcccatagtggtgctgctgtgt
ccaggctgggagaaggcccaggcggtgtacgacctgctggaggagatgaaggtcgcccag
gtcctccaccctgtcatcttactgctgggcgtcggcaaagacgaggccaaggccgtcagg
atccccaaaaactgcctgctgttagtgaccactcccttcagtctggtccgtctgctgtcc
tgccactgcttcctgttcctgcgtctctaccacctcgtgctggacgaggccgaccagctc
tttactttggctccggatcagatggcgaccattttgcagcatttccagaaggtgacctcc
agcgaggagaaggcttcctgtcctcagcagctcgttgccgtggcgaaaagatggaccagt
cacatggaaggtttggtagccaatcacatgccatacccctgcattgtcatgaccgtccct
gaggaagccgctctctatggtaacgttcagcagatcatcctcatgactctggagagcagc
aagctctcagtactgttgggtgcgttggatttcaaccccgacgtcggccagaagactctg
atcgtagccaactctgctcaggaggttgaagacgtgttcaaggccgtgagcaacaaatca
gcattctgcctcaagacccacgaagggttaacacaccagtttgacttcgtcatccagcag
tggaggaaagacgtcggccccggcactcatgttattctggtgaccaccagcgagtgtctg
aagtgtctgggagtcagagatgcgacctgcgtcgtccactacggcttccccacttccccc
aaactgttcggcggccggctctcctgtatggccgagaacttcaggaacctctctgaacga
gtttcctccgaggaccaaacggggagccgccgtcgcctctccaggtcggtgctgctgatc
tctgagaggaacgcctgtcacgtggtcggggttctgcgttacctgggccgaaccaacgcc
ctgcttcccccggagctgctgtccttcgctcagggggtccacgtggcccgggaggaccag
aagaccaacaggcctctctgcagatacctgaagagctttggagtctgcagagacagcagt
gtgtgtcccgaccgtcacagattcatctcccagctggaccagtccgtgcttcctgcctca
ggagtcatagaagtcgtccctctctacatcaagacggcatcggtgttctacggccgcgtc
gtccagaaggaggacggaggaggctttcggagcatggcgtccgagatgacggcgtactat
gccgacaggaaacctggagccaaggagctgctggagggaggcttatacgccgtgcaggag
gacgagctcttccacagggtgaagatcctgtccgtcccagagagaggtgaccggctgttt
ttcagcgtctttgtccgctttatcgacgtgggaaaggaggaggaggtcaaatcccatcag
atcctccagctcccggatcagttccactctctgcccggccaggccgtggagatcgtcgtc
tgccgggtcaaacccgtcgatgccgagaccgactggcacccaaaggtcaccagagcgatc
aaccagaagatccgaggccttcagcaccgagcccgagcggtgttcagtctgggaaacact
gtgtttgttgaccccatggtccggttgacccaggttccaggtatgaaaactgtcatcaat
gaatacagcgtgcagtcagagatcctgaacactgggatgggagtcagcaaccaggagcat
ctggacctgctgagggcgctctgccagcaagacgaggtcggcggcagcaaggaggcgggt
cacatctccgggtcgggggatggtccggcgtctctggaggtcaggatcaaagctgaggtg
gaggttcttgccgaagccgtcagagcagtcgaggtcagcagcatgctcgatgaccttcct
ctcctcgagccgtgtgagccgcttagtccagtatctccaacgatccagtctccggtccca
gaaccacaagcacctccagcagctaaccttcacctggtcccagtgtgtgataagaaaccc
ctgctggacagacagataaacacccacacagctgatctgaggtcagctgagcagatcatg
aggatcagagatggagaacttcgccctgcttgtctcaacctcgctggaaatggtgacgat
caaagcaacagacagcaggtcttcagcactaatgagacggactgtgatgactccacaaaa
agtttccaccctccggcccgttggtaccagacgtccgactctgtgatcgtgacggtgaag
ctgaggaacccggagagccagcgctgcgatttctaccccgacagagtcgtgtacagttgc
agagcgaacgctcggacctacagagccgacctgcagcttcacggcaacatcgctgctgag
cgttgttgctgggagatgaagtccaatgagccagtcctcaaactggtcaaacaacagcag
ggatactgggaaagactcctcaggaacaagaatatttttgtgagttacgacatggagcac
tttgaagaggaggaagacagaacaccaaatggactgtactttgtggaggacacgggaaaa
gacaactggtacgtgaactcagagagcggcagtgagagcgactga
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integrated database retrieval system
