Anoplopoma fimbria (sablefish): 129108184
Help
Entry
129108184 CDS
T09102
Symbol
lsp1a
Name
(RefSeq) non-muscle caldesmon isoform X1
KO
K12327
caldesmon
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
129108184 (lsp1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
afb04812
]
129108184 (lsp1a)
Cytoskeleton proteins [BR:
afb04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Others
129108184 (lsp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Caldesmon
Motif
Other DBs
NCBI-GeneID:
129108184
NCBI-ProteinID:
XP_054475861
LinkDB
All DBs
Position
19:complement(27808760..27837315)
Genome browser
AA seq
546 aa
AA seq
DB search
MSNALLKRNSSKQGLQNLMRLTAQRSVEDAEEVERERRRRAREAPSWSNGGSLPGESSPE
DGTPAEDSMFDCELKPSSSLALEEDEGFSDWTQRRERRRQQRLQELSQGGEEDEDEEEDT
VNKAVTVKTVKASVTSSGRLQRQEHLREDGAGVEMERRKEREEEAIRAERVRREEEREEE
EDKRKREEVKNRRKEEIQRPITEVEKRKEVKISYTSKVFVSQEPKQSNANGDATREEVMS
YKNKSKRSTSRAVEPEEADTILETEQRLEKIRQSLQQKESKELEQLRHRQVEAEQELEEL
KRKREERRQARAEEERRREEEEHQRLAKEEEERRRMKEDMERRRMEAAERMKSLSTSSVD
GDEAFTPFSPITPTHKISERTESLNRSLKKSNSFKKTQTLVLLPKIDDKLEQYAHAVENS
QEVRAVKASLTDLPSSPEVVISKKNLFEAGEAWSQSPTKGATCKDAEGLNVGVANRITQW
VKGSSDGGRQVPGKPADVRSGDVMQKKNMWEVIGDSTGQPGQKAKSSAAGKQYRFVVTGH
GKYEKK
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacgctctgctgaagagaaactccagcaaacagggtttacagaacctgatgagg
ctgacggctcagaggagtgtggaggacgccgaggaggtggagagggagcgacgccggaga
gctcgggaggcgccgagctggtctaacggcggctcgctgcccggagagtcgtcaccggag
gacgggacgccggcagaggacagcatgttcgactgcgagctgaagccgagcagctctctg
gctctggaggaggacgagggcttcagcgactggactcagcgccgagagagacggaggcag
cagcgactgcaggagctcagccagggaggcgaggaggacgaggacgaagaggaggacacg
gtaaacaaagccgtcaccgtgaagaccgtcaaggcctccgtcacgtcctccggtcgactc
cagagacaggagcacctgagagaagacggagccggggtggagatggagaggaggaaggag
cgtgaggaggaggcgataagagctgagagggtgaggagggaggaagagagggaggaagag
gaggacaagaggaagagagaggaggtgaagaacaggaggaaggaggagattcaaaggccg
attacagaggtggagaaaagaaaagaggttaaaatctcctacacgtccaaggttttcgtt
tcccaagagccgaaacaaagcaacgccaatggagacgcaaccagagaggaagtgatgtca
tacaagaacaagtcaaaaaggtccaccagcagagcggtggagccggaggaggcggacacc
atcctggagacggagcagcgtctggagaagatccgtcagagcctccagcagaaggagagc
aaggagctggagcagctgagacaccgacaggtggaggccgagcaggagctggaggagctg
aagaggaagagggaggagaggcgtcaagcccgggcggaggaggagcgtcggagggaggag
gaggagcatcaacggctcgccaaagaggaggaggagaggaggcgcatgaaggaggacatg
gagaggaggaggatggaggcagcagagaggatgaagagcctcagtacctccagcgtggac
ggagacgaagctttcactcccttcagccccataactcccactcacaagatctcagagaga
accgagtctctgaaccgctccctgaagaagagtaacagcttcaagaagacgcagactctc
gtcctgctgccaaagatcgacgacaagctggagcagtacgcacacgctgtggagaattcc
caggaagtcagggcagtgaaggcatcgctgactgacctgcccagctcacctgaggtcgtc
atctccaagaaaaacctgtttgaggccggagaagcctggagccagagtcccaccaaggga
gccacctgcaaggacgctgaaggtttgaatgtgggcgtggccaaccgcatcacccagtgg
gtgaagggttcgtctgatggtggcagacaggtgcccggaaaaccagcagatgtgaggtcc
ggagatgtgatgcagaaaaagaacatgtgggaggttattggagactcgacaggtcagcct
ggacaaaaggccaagagctcagcagctggtaaacagtatagatttgtggtgactggtcac
ggaaaatatgagaaaaaatga
DBGET
integrated database retrieval system