KEGG   Anoplopoma fimbria (sablefish): 129108316
Entry
129108316         CDS       T09102                                 
Symbol
cd44b
Name
(RefSeq) CD44 antigen
  KO
K06256  CD44 antigen
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb04512  ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:afb00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    129108316 (cd44b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:afb04147]
    129108316 (cd44b)
   04090 CD molecules [BR:afb04090]
    129108316 (cd44b)
   00535 Proteoglycans [BR:afb00535]
    129108316 (cd44b)
   00536 Glycosaminoglycan binding proteins [BR:afb00536]
    129108316 (cd44b)
Exosome [BR:afb04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   129108316 (cd44b)
  Exosomal proteins of other body fluids (saliva and urine)
   129108316 (cd44b)
  Exosomal proteins of colorectal cancer cells
   129108316 (cd44b)
  Exosomal proteins of bladder cancer cells
   129108316 (cd44b)
CD molecules [BR:afb04090]
 Proteins
  129108316 (cd44b)
Proteoglycans [BR:afb00535]
 Cell surface proteoglycans
  Others
   129108316 (cd44b)
Glycosaminoglycan binding proteins [BR:afb00536]
 Hyaluronan
  Cell surface receptors
   129108316 (cd44b)
SSDB
Motif
Pfam: Xlink DUF6480 ECSCR DUF2561 CSG2 zf_RING_Vps8_fungal DUF8060 Rcr1-2
Other DBs
NCBI-GeneID: 129108316
NCBI-ProteinID: XP_054476050
LinkDB
Position
19:6797958..6810293
AA seq 387 aa
MWTLVLGVTFGLLASSRSEQLQVNSRSCSYAGVFLAEGASRHSLNFDAARKVCEQQESNL
ASTEQILEAYDINMETCRYGWTSNMSIAILRHSYHENCANNMTGFIINSQDPEEPFDAYC
FDETAGPGQNCTKEFRVTVTLTSEAPAEPKPQASTSAEGQEVTTPKTRLEDASGSEDANR
TARDVIEMTTTNLIGLNQDEPDDATENPFGGSEDSTVRFTPTEFDRITGSGMMPPTEEEG
TSPTDETQLLTDNEQHIQTKKPDGDDTTTKPPQEQPNGKGQHDHQNDSSSGWLVIILVIV
VVAIILLLCAAVAMRKSLCGKQQTLMITSKDGGEGNGAAASASSSHAQEREQEMVTLMNK
EKIQENGNTEEFTVITLEESPDKEQLA
NT seq 1164 nt   +upstreamnt  +downstreamnt
atgtggacgcttgtcttgggggtcacctttggattattggcctcctccaggtcggaacaa
cttcaagtgaactcccgcagctgcagctatgccggggtatttcttgctgagggagcgagc
cgtcactccctgaactttgacgcagctcgaaaggtgtgtgagcagcaggagagcaacttg
gcgagtacagaacaaatcctggaggcctatgatataaacatggaaacatgcagatacggc
tggaccagcaatatgagcattgccatactcagacactcgtaccatgaaaactgtgcaaac
aacatgacaggcttcataattaattcacaagatcctgaagaaccctttgatgcctactgc
ttcgatgaaacagctggtcctggtcagaactgtaccaaagaatttagagtaacggtaacc
ttaacttcagaagcaccagctgaaccaaagcctcaggcctcaacatcagcagagggccag
gaagtgaccactccaaaaacacgactcgaggatgcttctggtagtgaggatgctaaccgt
acggctagggatgtgatcgaaatgaccaccactaatctcataggactgaatcaagacgag
ccagatgatgccaccgaaaacccctttggagggagtgaggacagcactgtgaggttcact
cctacagagtttgatcggatcactggatcagggatgatgccacccactgaagaggaggga
acctctccaactgacgaaacacaacttcttactgacaatgagcaacatatacaaacaaag
aagcctgatggagatgataccacaacaaagcctccacaagaacaacctaatggcaaagga
cagcatgatcaccagaacgacagttcatcgggctggctggttataattctagtgattgtg
gtcgttgctattattcttctcctgtgcgcagctgttgccatgagaaagagcttgtgcggc
aaacagcagaccctgatgatcacatccaaagacggcggcgagggcaacggggctgcagca
tcagcatccagctcccacgcccaggagagagagcaggaaatggtgaccctcatgaacaag
gagaagatccaggagaacggcaacacagaggagttcaccgtcatcacactagaggagtcg
ccagataaagaacagctggcttga

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