Anoplopoma fimbria (sablefish): 129108340
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Entry
129108340 CDS
T09102
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
afb03009
]
129108340 (ighmbp2)
03012 Translation factors [BR:
afb03012
]
129108340 (ighmbp2)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129108340 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
129108340 (ighmbp2)
Ribosome biogenesis [BR:
afb03009
]
Eukaryotic type
Other ribosome biogenesis factors
129108340 (ighmbp2)
Translation factors [BR:
afb03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
129108340 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
ResIII
DEAD
Viral_helicase1
nSTAND3
AAA_16
AAA_22
UvrD-helicase
IstB_IS21
SLFN-g3_helicase
Flavi_DEAD
ABC_tran
nSTAND_NTPase5
NAT10_TcmA_helicase
DnaB_C
PhoH
AAA_25
AAA
NPHP3_N
ATPase
HEM4
SRP54
Zot
AAA_31
Motif
Other DBs
NCBI-GeneID:
129108340
NCBI-ProteinID:
XP_054476089
LinkDB
All DBs
Position
19:527410..534637
Genome browser
AA seq
999 aa
AA seq
DB search
MAVEQFVSKTLELLQEEREAEIEETRLWRENISLKDLQNKGVCLLKLQIGSQSTGLYGRT
VLVLEPRKHLGFLSLPSNSFGPGDIVGLYDTGGCTQASQIGTGIVTRVSQASISVAFDDS
KDGLSFDTDALHNLLKLANDVTYKRMKYALNALNGYSNGPAANLINVLFGDSKPSNQSQP
NEVEFFNSNLDDSQREAVSFTLRQRELAVIHGPPGTGKTTTVVEIILQAVKQGQKVLCCA
PSNVAVDNLVERLARCKAKVLRLGHPARLLESIQKHSLDAILAQSDNANIIADIRKDIDK
AFIGMKKMREKGDRGNFKREIGELRKELKSREATAIAQILKSADVVLSTNTGASGDGPLK
FLPAEHFDWVVIDECAQALESSCWIALLKARKCVLAGDYKQLPPTIKSQKAASKGLSLSL
MERLIQMYGDSVVRMLTVQYRMNSAIMTWASKEMYQGRLTAHSSVERHLLKDLPGVTCVE
ETSTPLLLIDTAGCGLSEMEVTDEQSKGNQGEVDIVELHIKALTGAGVKAKDIAVIAPYN
LQVDLLRQKLSARHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLSEDRRINVAVT
RARRHIAVVCDTQTVQTHAFLKSLINHMTEFGEVRTAFEYIQDIVPQNYTRDHKDTKADT
SASSSKSTKQKVKDQPPSRAKQQQTKSTGSSSNENTAGTEKHTKSCLTSLTEEEQKKNRC
AEIRAQVENFLKDLSQKKLQFPSSLNSHDRLLVHQIAEELGLVHESQGEGKDRCITVARP
LLSTQAEKPTQEEDEEEEDEEEAQEEETLPNPQRESLCQPQVDLKSLHLERMKREQQKRE
EQAQQKKQQSSIPPAQATSSKKPKSAKGKNRMKAGACGIAAAAAPDDDFDTLINAVIKAE
RVCSFVKCKVSVLTLGQLCQFCNRQYCLSHHIPEVHGCGDKAKSHARMRISKEGILYAGS
GKKDKSMDPNKKAYLQRKLDSKLKDMSSQRKPKNKENDS
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggcggttgaacagtttgtgtcaaagacactcgagcttctacaggaggagagggaggct
gaaatagaggagaccaggttatggcgggagaacatctctctcaaggatcttcaaaataaa
ggagtttgcctgctgaaactgcagataggaagtcagtccacaggcctgtacggacgcaca
gtcctcgtccttgagccaagaaagcatcttggtttcttgtctctgccaagcaacagcttt
ggacctggggacatagttggcttgtatgacactggtggatgcacccaggcctcacagatc
ggcacaggaatagtgacgagggtcagccaagcttctataagtgtggccttcgacgactca
aaggacggcctcagctttgatacggatgctcttcacaacctcttaaagttggcaaatgac
gtcacctacaaacggatgaaatatgccttgaatgcattaaatggatacagcaatggacca
gctgccaatctgataaatgttctttttggagactcaaaaccgtctaatcaatcacagcct
aatgaagttgaattctttaattcgaacctggatgattctcagagagaagctgtgtccttt
actctgcggcagagagaactggctgtgattcatggaccaccgggcactgggaagaccacc
acagtggtggagataatcctgcaagcagtaaaacaaggccagaaggtcctctgctgtgcg
ccctctaacgtggccgtggataatttagtggagaggttagctcggtgcaaagcaaaggtg
ctgaggctgggtcaccctgccagacttctggagtccatacagaaacactcactggacgcc
atcctcgcacagagtgacaacgcgaacatcatcgctgacatccgtaaagacatcgataaa
gcatttattggaatgaagaagatgcgtgaaaaaggagaccgggggaacttcaaaagagaa
ataggggagcttagaaaagagctgaaatcaagggaagcaacagccatagcccagatccta
aaaagtgctgatgttgtgttatcaaccaacacaggtgctagtggcgacgggcctctgaag
ttcctgccagcagagcattttgattgggttgtgatagacgagtgcgctcaggcgctggag
agcagctgctggatcgccctgctgaaggcacgcaagtgcgttctggctggagactacaag
cagttaccacctactatcaaatcacaaaaggctgcatccaaaggcctctctctgagtctc
atggagagacttatccagatgtatggggactccgtggtccgtatgctaacagttcagtac
cgcatgaacagtgccatcatgacgtgggcctccaaagagatgtaccagggcagactaacc
gctcacagctctgtggagaggcacttgttaaaagatttaccgggagtcacctgtgttgaa
gagaccagcacgccacttcttcttatcgacactgctggctgcggtctgagtgagatggag
gtcacagatgagcagtccaaaggcaaccagggtgaggtcgacattgttgaactgcacata
aaggccttgactggagccggggttaaagctaaagacatcgctgttattgctccatacaat
ctacaagtcgatcttctgcgtcagaaactttctgcgaggcatccagagctggagataaag
tccgtggatggatttcagggcagagagaaagaggctgtggttttgtcgttagttcgctcc
aacagaaagggtgaagttggatttctgtcagaggacagaaggattaatgtggctgttaca
cgtgcaagacgtcacatcgctgttgtgtgcgacacccagaccgtccagactcatgctttc
ctgaagtccctgatcaatcatatgactgagtttggcgaggtcagaacagcatttgagtac
atccaagacatcgtgccacagaactacacccgtgaccacaaagacacaaaggctgatacg
tctgccagcagctccaaatccaccaaacagaaggttaaagatcagcctccgagcagggcg
aagcaacaacaaactaaatccactggtagcagcagtaatgaaaatactgctggtacagag
aagcacacaaagtcctgcctgacatccctgacagaggaagagcagaagaagaacagatgt
gctgagatcagagcacaggtggagaactttctaaaggacttaagtcagaaaaaactacag
ttcccatcgtcgcttaactctcatgaccgcctgctggtccaccagatcgctgaggagctg
ggcctcgtgcatgagagtcaaggtgaaggtaaggacaggtgtatcacggttgccaggccc
ctgttgtcaacacaagcggagaagccaacacaagaagaagacgaagaagaagaagatgaa
gaagaagctcaggaagaagaaacactcccaaatccccaaagagagtcgctgtgtcaacct
caagtagacctgaaaagtttacatttggagcgaatgaagagggagcagcagaagagggaa
gaacaagctcaacaaaaaaagcaacagagcagcatcccaccagctcaggccacgtcatca
aagaagcccaagtctgccaaaggaaagaaccggatgaaggcgggcgcttgtggcatcgct
gctgccgcggctccagatgatgactttgacacgctcatcaacgctgtcataaaggctgaa
agagtgtgcagctttgtcaagtgtaaggtttctgttctgacactcggacagctttgccag
ttctgcaacaggcagtattgtctcagtcatcatataccagaggttcacggctgtggagat
aaagccaagtctcatgctcggatgagaataagcaaagaaggcattctgtacgcagggagt
gggaagaaagacaaatccatggaccccaataagaaagcctatctgcaaaggaaactggac
tctaagttgaaagatatgtcatcacagaggaaaccaaaaaacaaagagaatgacagttaa
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