Anoplopoma fimbria (sablefish): 129108363
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Entry
129108363 CDS
T09102
Symbol
edc3
Name
(RefSeq) enhancer of mRNA-decapping protein 3
KO
K12615
enhancer of mRNA-decapping protein 3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129108363 (edc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129108363 (edc3)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129108363 (edc3)
mRNA degradation factors
5'-3' decay
Decapping complex
129108363 (edc3)
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Ortholog
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GFIT
Motif
Pfam:
Edc3_linker
YjeF_N
FDF
LSM14
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
129108363
NCBI-ProteinID:
XP_054476121
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Position
19:18566960..18572091
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AA seq
478 aa
AA seq
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MAADWLGSLVSINCGPTLGVYQGEVVSVDQSSQTITLRQPFHNGVKCPVPEVTFSAIDIK
ELKILDIRNGNARSSSSATTKGGSVPVSVPKGDPRSVEKVNSPQHCSKSYGERHLDIPGQ
PKGFRRRHNSWSSSSRGANQATPKKNGVKNGQMKIRDDECFGDSMDDGMDTDFDFEGNLA
LFDKAAVFTEIDISERRNGARSRGTPQDQTPTRYRHDENILEAKPVVFRQITVPQPAAKE
YCTDSGLVVPSISYELHQRLLSVAERHGLSLERRLEMTGVCASQMALTLLGGPNRFTPKN
LHQRPTVALLCGPHVQGAQGISCGRHLANHEVEVILFLPNFVKMLDSVTSEVTLFNKTGG
KQVSSVKDLPETPVDLIINCLDCHENTFLMDQPWYRAAADWANQNRAPVLSLDPPCSGKG
LAVEAKWSLALCLPLPLAEGAGRVYLCDIGIPRQVLQEVGIKYISPFGCKFVIPLHSA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggattggttgggtagtttggtgtcaattaactgtgggccaacgctgggagtg
tatcaaggagaagtggtgtctgtggaccagtccagccaaaccatcaccttaaggcaacct
ttccacaatggagtcaagtgtcctgttcccgaggtcacattcagtgccattgacataaag
gaactaaagattttagatatcagaaatggcaatgctaggagcagctcttctgcaactaca
aagggaggcagtgtcccagtttcagtcccaaagggtgatcccaggtctgtggagaaagtc
aactctcctcagcactgctccaaaagctatggagaacgtcacctggacatacccggccaa
ccaaaaggatttcgtagaagacacaactcctggtcatctagtagtcgaggggcaaaccaa
gcgacaccgaagaaaaacggggtgaagaatggtcagatgaagataagagacgacgagtgt
tttggggatagcatggacgacgggatggacacagactttgattttgaaggaaacttggct
ctttttgacaaagcagcagttttcacagaaatcgacatatcagagcgccgtaatggtgca
aggtcacgtgggactcctcaagatcagacacccacacgttaccgtcacgacgaaaacatc
ctggaggccaaacctgttgtgttcagacaaattactgtaccgcagcctgcggccaaagag
tactgcaccgattccgggcttgttgtgcccagtatatcctatgaactacaccagcgtctg
ttgtcagttgctgagcgccatggtctctcactggagcgaagacttgagatgactggagtg
tgtgcaagtcagatggcacttacattgctgggtgggcccaacagattcactccaaaaaat
ttgcaccaacgtcccacagttgctctgctgtgtgggcctcatgtccagggtgctcagggc
atcagctgtggtcgtcacctggccaatcatgaagtggaggtcatcttgtttctgcccaat
tttgtcaagatgctcgactcagtcaccagtgaggtcaccctcttcaacaaaactggtggc
aaacaggtgtcaagtgtcaaagaccttccagaaactcccgtggacttaatcataaactgc
ctggactgccacgagaacacattcctgatggatcagccttggtatcgagcagctgcagac
tgggctaaccagaaccgagcgccagtgctcagtttagaccctccttgtagtggaaagggg
ctggcagtcgaggcaaaatggtccctcgctctctgcctcccccttcccctggctgagggg
gctggcagggtttacctgtgcgacataggtatccctcgccaggtgttgcaggaagtggga
atcaagtacatttctccttttggctgcaaatttgtcatccccttgcactctgcataa
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