Anoplopoma fimbria (sablefish): 129108427
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Entry
129108427 CDS
T09102
Symbol
prpf8
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129108427 (prpf8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129108427 (prpf8)
Spliceosome [BR:
afb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129108427 (prpf8)
Complex C
U5 SnRNP specific factors
129108427 (prpf8)
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Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
129108427
NCBI-ProteinID:
XP_054476252
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All DBs
Position
1:complement(17551797..17568108)
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AA seq
2338 aa
AA seq
DB search
MAATFPYRGAPPGMPPGVPPPVPVPDYMSEDKLQEKARKWQHLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGTMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDNEEDSSVAEWLYEHQPLKDTAKFVNGTTYRRWQFTLPMMST
LYRLANQLLTDLVDFNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDINLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
TRRAIDIPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDAFQLSDGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETAEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDT
PTESAHPIRLYCRYIDRIHIFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPNQLPGHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYDLQLANPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctaccttcccctacagaggggcccctccaggaatgcccccaggtgtcccccct
ccggtgcctgtcccagactacatgtccgaggacaaactgcaagaaaaagcaagaaaatgg
cagcacttgcaggcaaagcgctactcggaaaagagaaagtttggctttgttgatgcgcag
aaggaagacatgccacctgaacatgtccgcaagatcatcagggaccatggagacatgact
aatagaaagtttcgtcatgacaagagggtgtacctcggtgctctcaagtacatgccccat
gctgtactgaagctgctggaaaacatgcctatgccctgggaacagatcagagatgtgcct
gtcctctaccacatcactggagctatttcctttgtgaatgaaatcccctgggtcatcgag
ccagtctacatcgcccagtggggcaccatgtggatcatgatgcgacgtgagaaacgtgat
cgtcggcacttcaagaggatgcgctttccaccatttgatgatgaggagccgccgctggac
tacgctgacaacatccttgatgtggagccactggaggcaatccagatggagctggacaac
gaggaggactcttcagttgcagagtggctctatgagcaccaacccctcaaagacactgcc
aagtttgtgaatggcaccacctaccgtcgctggcagttcacactgcccatgatgtccaca
ctgtaccgcctggctaatcagctgctcactgacctggtggatttcaattacttctatctg
tttgacctcaaagccttcttcacttccaaggccttgaatatggccatccctgggggaccg
aagtttgagccactggttagggacatcaacctccaggatgaagactggaatgagttcaat
gacatcaacaagattatcatccgacagcctatcaggacagagtacaaaatcgccttcccc
tacctgtacaacaatttgccgcaccatgtccacctcacctggtatcacacacccaacgtg
gtgtttatcaagacagaggatccagatctcccagcgttctactttgatccgctgatcaac
cccatttcacacagacattctgtcaagagtcaggagcctctgcctgatgacgatgaggag
tttgagcttcctgagtatgtggagcccttcctcaaggagaccccactctacacagacaac
actgccaacggcatcgctctgctgtgggctccgagacccttcaacctccgatctgggcgc
acaaggcgtgccatcgacatcccgctgatcaagaactggtaccgtgagcactgccctgca
ggacagccagtgaaagtgcgtgtgtcgtaccagaaactgttgaagtactatgtgctcaat
gctctgaaacacagaccacccaaagcccagaagaagaggtatctgttccgctccttcaag
gccaccaagttctttcagtccaccaagctggactgggtggaggtgggtctgcaggtttgc
agacagggttacaacatgctcaatctgcttatccaccgtaagaacctcaactacctgcat
ctcgactacaacttcaacctgaagcctgtcaagacactgaccacaaaggaaagaaagaag
tcccgattcggtaacgccttccacttgtgcagagaggtgctgcgtcttagcaagctggtg
gtggacagccacgtgcagtacagactgggaaatgttgacgctttccagttgtctgatggg
ctgcagtacatcttcgcccatgttggtcagctgaccggcatgtaccgctacaagtacaag
ctgatgagacaaatccggatgtgcaaagatctaaagcatctcatctactacaggttcaac
actggtcctgtgggcaaaggtccaggctgtggcttctgggctcccggctggagagtgtgg
ctgttcttcatgaggggaatcactcccctgttggagaggtggctgggaaatctgctcgcc
aggcagtttgaaggacgtcactccaagggcgtagccaagacggtcaccaaacagcgtgtg
gagtctcactttgacctggagttgcgtgccgctgtgatgcacgacatcttggacatgatg
cccgagggcatcaaacagaacaaggccagaaccatcctgcagcatctcagtgagtcctgg
aggtgctggaaggccaacatcccctggaaggtgccaggtctgcccactcccatcgagaac
atgatcctgcgctacgtgaaggctaaggccgactggtggacaaacactgcccactacaac
cgtgagcgaatccgccgtggagccactgtggacaagacggtgtgcaagaagaacctgggg
aggctgactcgtctgtacctgaaagctgagcaggagagacagcacaactacctgaaggat
ggtccctacatcacagctgaagaggcggtagccatttacaccaccactgttcactggctg
gagagccgtcggttctcacccatcccgttccctccactgtcctacaagcacgacaccaaa
ctgctcatcctggccttggagaggctcaaggaggcttacagtgtgaagtctcgtctgaac
cagagtcagagggaggagctggggctgattgagcaggcttacgacaatcctcacgaggcc
ttgtccagaatcaaacgtcacctgctcacccagagagccttcaaagaggtgggtatcgag
ttcatggacttgtacagtcacctggtgcccgtctatgatgtggagcccctggagaagatc
accgacgcctaccttgaccagtacctgtggtacgaggcggacaagagacgcctcttccca
ccatggatcaaacccgccgacactgaaccaccaccactgctggtctacaagtggtgccaa
ggcatcaacaacctgcaggacgtgtgggagactgcagagggagagtgcaacgtgatgctg
gagtcccgctatgagaagatgtacgagaagattgatctgactctgctcaacaggctgctg
cgtctcattgttgaccacaacatcgctgattacatgacagccaagaacaacgtggtcatc
aactacaaggatatgaaccacaccaactcctacggcatcatcagggggctccagtttgcc
tcgttcattgttcagtactacggcctggtgatggacctgctggtgctgggcctgcaccgt
gccagtgaaatggccggcccgcctcagatgccaaatgacttcctcagtttccaagacaca
cccacggagagcgcccaccccatcagactgtactgccgctacatcgaccgcatccacatc
ttcttcaggttctctgctgatgaggccagggatctgattcagaggtacctgaccgagcac
ccggaccccaacaacgagaacatagtgggttataacaacaagaagtgctggccccgtgat
gcccgcatgagactgatgaagcacgatgtcaacctgggacgtgctgtgttctgggacatc
aagaaccgcctgcccagatctgtgactactgtccagtgggagaacagctttgtgtcggtc
tacagcaaagacaaccccaacctgctcttcaacatgtgtggctttgagtgccgcatcttg
ccaaagtgccgcaccagctacgaggagtttactcacaaggacggcgtgtggaacctgcag
aacgaggttaccaaagagaggacggcgcagtgtttcttgcgtgtggatgacgaatcaatg
cagcgtttccacaacagggtgcgtcagatcctgatggcctctggatccacaacattcacc
aagattgtgaacaaatggaacactgctctgattggtctgatgacgtatttccgtgaggct
gtggtcaacacccaggagctcctggacctgctggtgaagtgtgagaacaagatccagaca
cgtatcaagattggtctgaactccaaaatgcctagccgtttccctcctgtggtcttctac
actcccaaagagttgggtggccttggcatgctgtccatgggccacgtgcttattccacag
tctgaccttcggtggtccaagcagacagatgtgggaatcacccacttcaggtccggaatg
agccacgaggaggaccagctgattcctaacttgtatcgttacattcagccatgggagagt
gagttcatcgactcccagagagtttgggccgagtacgccctcaaaagacaggaggccatt
gcccagaacaggcgtctgaccctggaagatctagaggactcatgggacagaggaatcccc
cgtatcaacacactcttccagaaggacagacacacactggcctatgacaaaggctggaga
gtcaggacagatttcaaacagtaccaggtgctgaagcagaatccgttctggtggactcac
cagaggcacgacggcaaactgtggaacctgaacaactaccgcacagacatgatccaggct
ctgggtggagtggagggcatcctggaacacacgctcttcaaaggcacttactttcccacc
tgggagggtctcttctgggaaaaggccagtggctttgaggagtccatgaaatggaagaag
ctgaccaatgcccagcggtctggtctgaaccaaatccccaaccgtcgcttcacactttgg
tggtcacccaccatcaacagagccaacgtgtatgtgggtttccaggtgcaacttgacttg
acaggaatctttatgcacggcaagatcccaacactgaagatctccctcattcagatcttc
agggctcacttgtggcagaagattcatgagagcatcgtcatggatctctgtcaagtgttt
gatcaggagctggatgctcttgagattgagacagtgcagaaggagaccatccaccccagg
aagtcgtacaagatgaactcctcctgtgcagacatcctcctctttgcatcatacaagtgg
aacgtctctcgaccatctctgctggctgactcaaaggacgtgatggacagcaccaccaca
cagaagtactggatcgacatccagctgcgttggggtgactatgactcccatgacatcgag
cgctacgccagagccaagttcctggactacaccaccgacaacatgagtatctacccctcc
cccaccggggtgctcattgccatcgacctggcttacaacctccacagtgcctatggaaac
tggttcccaggaagcaagcctctgatccagcaggccatggccaagatcatgaaggccaac
cctgccctgtacgtactcagagagcgcatccgcaaaggtctgcagctgtactcctccgag
cccactgagccctacctgtcctcacagaactacggtgaactcttctccaaccagatcatc
tggtttgtagacgacaccaacgtgtacagagtcaccatccacaagacctttgagggtaac
ttgaccacaaagcccatcaatggagctatcttcatcttcaaccccaggactggtcagctt
ttcctcaagatcattcacacatctgtgtgggccggacagaaacgtctgggacagctggcc
aagtggaagacagctgaggaagtggctgccctgattcgctccctccccgtggaagagcag
cccaaacagatcattgtaaccaggaagggcatgctggaccctctggaggtccacttgctt
gacttccccaacatcgtgatcaaaggttctgagttgcagctgccattccaagcctgtctg
aaggtggagaagtttggagacctgatcctgaaggcaacagagcctcagatggtgctgttc
aacctctacgacgactggctcaagaccatctcgtcttacacagccttctctcgactcatc
ctgatcctaagggcactccacgtcaacaacgaccgtgccaaggtgatcctgaaacctgac
aaaaccaccatcaccgagcctcaccacatctggcccacactcactgacgaggagtggatc
aaggtggaagtgcaactcaaggatctcattctggcagattacggcaaaaagaacaatgtg
aacgtggcctcactgacccagtctgagatccgtgacatcatcttgggtatggagatctcc
gctccgtcacagcagcgccagcagatcgctgagattgagaagcagaccaaagagcagtcg
cagctcacggccacgcagacccgaaccgtcaacaagcacggtgatgagatcatcacctcc
accacctccaactatgagacccagaccttctcctccaagactgaatggagagtcagggcc
atatctgctgccaacctccacctccgaaccaaccacatctacgtgtcgtctgacgacatc
aaggagacgggctacacctacatcctgcccaagaacgtcctcaagaagttcatctgcatc
tcagatctgcgagcacagattgcaggctacctgtacggcaccagtccaccagacaacccc
caggtgaaggagatccgttgtatcgtcatggtgccacagtgggggacacatcagactgtc
cacctgcccaaccagctgccgggtcatgaataccttaaagaaatggagcccctcggctgg
atacatactcagcctaatgagtcaccccagctgtccccacaggacgtcaccacccatgcc
aaggtcatggctgacaacccctcttgggacggagaaaagaccatcatcatcacttgcagc
ttcaccccgggctcgtgcacgctgacagcctacaagctgacacccagtggctacgagtgg
ggccggcagaacacggacaagggcaacaaccctaaaggctacctgccgtcccactatgaa
agggtgcagatgctgctctctgatcgcttcctgggcttcttcatggtgcccggacaggtg
tcctggaactacaacttcatgggtgtgcgccatgaccccaacatgaagtacgacctacag
ctggccaaccccaaggagttctaccacgaagtccaccggccctcgcacttcctaaacttt
gcctcactccaggagggtgagatctataatgcggaccgtgaggacatgtatgcctga
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integrated database retrieval system
