Anoplopoma fimbria (sablefish): 129108461
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Entry
129108461 CDS
T09102
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129108461 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129108461 (cnot1)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129108461 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129108461 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
129108461
NCBI-ProteinID:
XP_054476254
LinkDB
All DBs
Position
19:11888745..11911854
Genome browser
AA seq
2393 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLISKPNFIATLCYAIDNPLHYQKSLKPSAHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFIKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LQLLLSHLLFGQKGASGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPEKRDILMDRIL
PDSGELAKTMMESSLAEFMQEVGYGFCASLDECRNIILQYGVREVTASQVARVLGMMART
HSGLTDGIPLQSISAPGSGIWSDGKDKNDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTYE
LDHPGFIIRDSKGLHTVVYGIQRGLGMEVFPVDLIYRPWKHAEGQMSFIQHSLMSPEVFS
FADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGQYEQVKQLFSFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPDKDQPKSAQLPPETLATMLACLQSCAG
SVSQELSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQMDSLSGMGSL
NLGGTATSHTQSMQGFPTSLSSAFSNPQSPAKAFPPLSNPNPSTPFGGIGSLSSQLPGMD
SGPLGTGIGSGIGSSLGMQTVNTDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQNFSKE
IDDEANSYFQRIYNHPPHPTMSVDEVCSDEVLEMLQRFKDSTIKREREVFNCMLRNLFEE
YRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAAL
DRFKNRLKDYPQYCQHLASIAHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSITTPGSL
ALAQVQAQSQQPGVPKAPQPGQPSTLVTTTTTTTTVAKTPTITRPTPSTFKKDVPPSINT
TNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKDEFMPWVSQ
YLVMKRVSIEPNFHGLYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLL
KNLGHWLGMITLAKNKPILYTDLEVKSLLLEAYLKGQQELLYVVPFVAKVLESSLRSMVF
RPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKEKLKSL
EEQLSAPKKEAKPPEEMLPVSTTGDFVPFAAPPSTPAATTTACTTTGPPTPQFSYHDINV
YALAGLAPHININVNIPLLQAHPQLKQCVRQSVERAVQELVHPVVDRSIKIAMTTCEQII
RKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQ
REMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPV
VLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAW
ATDDVAQIYDKCMADLEQHLHAIPPALAMNPLTQALRSLLEAVALARNSRDGIAALGLLQ
KAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKY
NVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHVTEAD
LFHTIETLMRTCAHSRANAPEGLPQLMDVVRSNYEAMIDRAHGGPNFMMHSGISQASEYD
DPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCT
EMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLL
NKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTF
HILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVE
LNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLP
DPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVS
NEPGNRYNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGR
YLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLL
ITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7182 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggctttgtctcaaatcagctatctggtggacaattta
actaagaaaaactaccgagccagccagcaagaaatacagcatattgtaaatcgtcacggc
cctgaggcagacaggcatttactacgctgtctcttctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggactttcaccagacacagtttctgatccaggagtgcgtgtcg
ctgatatcaaagccaaactttatcgctactttgtgttacgccattgacaatcccctgcac
taccagaagagtttgaagccatcggcccatttattcactcaactgagtaaagttcttaaa
ctcagcaaggtccaagaggtgatatttggacttgctttgctcaactccagcaacgcagac
cttcgtggttttgctgcgcagttcatcaagcagaaacttcctgacctcctgcggtcatac
gttgacgcggatctcggagggaaccaggaaggtggcttccaggacattgccatagaagtc
ttgcaattattgctctcccatctactgtttggccagaagggagccagtggggtagggcaa
gagcagattgacgccttcctcaagacactttgccgagatttcccccaggagcgctgccct
gtggtgctcgcaccactgctgtaccctgaaaaacgggacattctcatggacaggatcctg
ccagactcgggagagttagctaagaccatgatggagagttctcttgcagaattcatgcag
gaagttggctatggcttctgtgctagtctggatgagtgcagaaacataatcctccagtat
ggggtgagagaggttactgccagccaggtggccagggtcctgggcatgatggctcgtacc
cactctggcctaactgatggcatcccactacagtccatctctgctccaggaagtggtatc
tggagcgacggtaaggacaagaacgatggctcgcaggcacacacgtggaatgtcgaggtt
ctcatcgacgtcgtgaaagaagtgaatcccaacctgaacttcaaagaagtgacatacgag
ctggaccacccaggcttcataatccgggacagtaaaggcctgcatacagtcgtgtatggc
attcagagggggttgggcatggaggtctttcccgtcgatctcatctatcgaccatggaaa
cacgccgagggacagatgtcattcattcagcactccctgatgagcccagaagtgttctcc
tttgctgactacccttgccacactgtggccattgacatccttaaggccccaccagaggat
gacaacagggagattgccacctggaaaagtctggacctggtggagagcctgcttaggctt
tctgaggtgggacagtatgagcaggtgaagcagctgttcagctttccaatcaagcactgt
ccagacatgttggtgctggcgttgctgcagatctccacttcctggcacacactgcgccat
gagctcatctctaccctaatgcccatctttttgggtaaccaccctaactctgccatcatc
ctgcactacgcctggcatggacagggacagtctccctccatccgtcagctgattatgcat
tcaatggccgagtggtacatgagaggggagcagtatgaccaggccaagctgtctcgcatc
cttgatgtggcccaggacttgaagtctctatcgatgttgctgaatggtactccatttgcc
tttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgataaatgg
ctgactgacaaaatcagagagcatggggaacctttcattcaggcctgtgttacattcctg
aagaggcgctgcccatccattatggggggtctggctccagacaaggaccagcccaaaagt
gcccagttgcccccggagaccttagccaccatgctggcctgcctgcagtcctgtgctggg
agcgtgtcccaggagctgtcagagaccatcctgaccatggttgccaactgcagcaatgta
atgaataaagcccgacagccaccaccaggggtaatgccaaagggacgtgcccccagcacc
agcagcctggatgccatctctcctgtacagatggactctctgtccggcatgggttctttg
aacctggggggcacagccacctcccacactcaaagcatgcagggtttcccaacctcactg
agttcagctttcagtaatccacagtctccagcaaaggccttcccaccgctctccaaccca
aaccccagcacaccgtttgggggcattggcagcctgtcctcccagcttcctggtatggac
tctggtcccttgggcacaggcatcggctctggtattggctctagtctggggatgcaaact
gtcaatacagacccttttggcaccaggaagatgagcacaccaggcctgaacccacccacc
tttcagcagactgacctttctcaggtgtggcccgaggcaaaccagaactttagtaaggag
atagacgatgaagcaaacagttacttccagcgcatctacaaccacccacctcacccaact
atgtctgtggatgaagtatgtagcgatgaagtactggagatgctgcagaggttcaaggat
tcaaccatcaagcgggagcgcgaggtgttcaattgcatgctgcggaacttgtttgaggaa
tatcggttcttcccccaatacccagacaaggagctgcacatcactgcctgcctttttggt
ggcattatcgagaagggtcttgtcacctacatggccctgggcttggccctccgatatgtt
cttgaagccttaagaaaaccctatggatccaaaatgtattactttggaattgccgcccta
gataggtttaaaaacagactaaaggactatcctcaatattgtcaacacttggcttcaatt
gcccacttcttgcaattcccccaccatttacaagagtgtgtgcagtatatcgagtatggc
caacagtcacgggaccctccggtgaagatgcagggctccatcaccaccccaggcagtctg
gctctggcacaagtccaagctcagtcacagcaacctggtgttcccaaagcaccgcagcca
ggtcagccgagcactctagtcaccaccacaacgactacaaccacagtggccaagacacct
accatcacaagacccacacccagcaccttcaagaaggatgtgcccccctccataaacaca
accaacattgacactctgctggtggccactgaccaaacagaacggattgtagagcctccg
gaaaatgtccaggagaagattgcttttatcttcaacaacctttcccagtccaacatgaca
cagaaggttgaggagttgaaagagactgtgaaggatgagtttatgccctgggtgtcacag
tacctggtgatgaagcgagtcagcattgagcccaactttcacggtctctactccaacttc
ctggacactctcaagaaccctgagtttgtgaagatggtcctcaatgagacttacaggaat
atcaaggttctgttgacctctgacaaggcagctgccaatttctctgatcgctccctgctg
aagaacttgggccactggttgggcatgattacactggccaaaaacaagcctatcctctac
accgatttggaagtcaagtctctgctactggaagcctacctgaaaggccagcaggagcta
ctctatgtagttccctttgtggccaaagttttggagtccagtctacgaagcatggtcttc
aggccccagaacccctggaccatggccatcatgaatgttctcgctgagctgcatcaagaa
catgacctcaagctcaacctgaagtttgagattgaagttctgtgtaagaacttgtctttg
gacatcaatgacctcaagccagggaacttgctgaaggacaaagagaagctgaagagcctg
gaggagcagctgtctgcaccaaagaaagaggcaaagcctccagaagagatgctgccagtt
tctaccacaggagacttcgttccatttgcagcccctccatcaaccccagctgccaccacc
accgcttgcacaaccactgggcccccgaccccacagttcagttaccacgacatcaatgtg
tatgccttggcaggcctggctccacacatcaatataaatgtcaacatccctctgcttcag
gcccatcctcagttgaagcagtgcgttcggcagtcggtagagcgagctgttcaggagctg
gtgcaccctgtggttgaccgctccatcaaaatagccatgacaacctgtgagcagatcatc
aggaaggactttgccctggattcggaggagtcccgcatgcgtgtggcagcccaccatatg
atgagaaacctgaccgctggcatggccatgatcacctgccgcgagccgctgctcatgagc
atcgccaccaaccttaagaacagctttgctgctgcacttagggcaccaacaccccaacag
agggagatgatggaggaggctgcagccaggattgctcaagacaactgtgaactggcctgc
tgcttcattcagaaaacagccgtggagaaggctggccctgaaatggacaagcgactagcc
acggagtttgagctgaggaagcatgcccgccaagagggacgtcgctattgtgatcctgtt
gttctgacttaccaggctgaacgtatgcctgagcagatcagactcaaggtgggaggagtg
gacccgaagcaacttgctgtgtatgaggagtttgcaaggaacgttccaggtttcttaccc
agcaatgatctctcccaacccactggcttcttggctcagcccatgaagcaacaggcatgg
gccacagatgatgtagctcagatctacgataagtgcatggcagacttggagcaacatctc
cacgccatccctccagccctggccatgaaccccctgactcaggctctgcgcagcctgctg
gaagccgtggccttggcgaggaactccagggacggcattgctgcacttggccttctgcag
aaggctgtggaagggcttctggatgctactagtggtgctgatgcagacttgctgctccgc
tacagggaatgccacctgctggtgcttaaagcccttcaggatggacgtgcctatggacca
cagtggtgcaataagcagataaccaggtgtctgattgaatgtcgtgatgagtacaaatac
aacgtagaggccgtggagcttctgatcagaaaccacctggtgaacatgcagcagtacgac
ctgcacctggcacagtcgatggaaaatggactgcactacatggcggtcgcttttgccatg
cagttggtgaagctccttctggtggatgaacgcagtgtcagccatgtcacagaggccgat
ctcttccacacaattgagaccttaatgagaacctgtgcacactccagagccaacgcacct
gagggcctcccccagctgatggatgttgttcgctccaactatgaggccatgattgaccgg
gcccacggaggacccaacttcatgatgcactctgggatctcacaggcgtcagaatatgat
gatcctccaggcctgagggagaaggccgagtatctcctgagagagtgggtcaacctgtac
cactcagctgccgccggcagggatagcaccaaagctttctctgcatttgtcggccagatg
caccagcagggcatcctgaagaccgatgacctgatcacaaggttcttccggctgtgcaca
gaaatgtgcgtggaaatcagctatcgggcacaggctgagcagcagcacaacccagcagcc
agtgcagccatcatcagagccaagtgctaccacaacctggatgcctttgttaggctcata
gccctgctggtcaaacactctggagaggccaccaacacagtgacaaagatcaacctcctc
aacaaggtgctaggtatcgtagttggcgtgctgattcaggaccatgatgtccgtcagaca
gaattccaacagctgccataccaccgcattttcatcatgctgctgttggagctgaacgcc
cccgaacatgttctggagaccatcaactttcagacactcaccgccttctgcaataccttc
cacatcctgaggcccaccaaagcacccggctttgtgtacgcctggctggaactcatctcc
catcgcatcttcatcgccaggatgctggcgcacactccgcagcagaagggttggcccatg
tacgcacagctgctgattgatctcttcaagtacctagccccattcctgaggaatgtagag
ctcaacaaacctatgcaaatcctctacaagggcacgctgcgagtgctcctggtcctgctg
catgacttcccagagttcctgtgtgactaccattacggcttctgtgacgttatcccaccc
aactgcatccagctccgcaacctcatcctcagtgccttcccacgcaatatgaggctccct
gacccttttacacccaatctcaaggtggacatgctgagtgagatcaacatcgcgccccgt
atcctcaccaacttcacaggcgtgatgccttcccagttcaagaaggacttggactcatat
ctgaagactcggtcacctgtcaccttcttgtctgagctgcgcagcaacctgcaggtgtcg
aacgagccaggaaaccgctacaacatccagctgatcaatgctctagtgttgtacgtaggc
acacaggcaatcgctcacatccacaacaagggcagcaccccctccatgagcaccatcacc
cactctgcacacatggacatcttccagaacctggccgtggacctggacactgaagggcgt
tacctgttcttgaacgcgatcgccaatcagctgcgctacccaaacagccacactcactac
ttcagctgcaccatgctctacctgtttgccgaggccaacaccgaggccatccaggagcag
atcaccagggttctgttggagagactgatagtgaacaggcctcacccatggggtctcctc
atcaccttcatcgagctgatcaagaatcctgccttcaagttctggagccacgactttgtg
cactgtgctcccgagatcgagaagctgttccagtcagtggcccagtgctgcatgggacag
aagcaggcccagcaggtgatggagggcaccggtgccagctag
DBGET
integrated database retrieval system
