Anoplopoma fimbria (sablefish): 129108526
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Entry
129108526 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC4
KO
K10614
E3 ubiquitin-protein ligase HERC3 [EC:
2.3.2.26
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129108526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129108526
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
129108526
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
HECT type E3
129108526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
RCC1
RCC1_2
Motif
Other DBs
NCBI-GeneID:
129108526
NCBI-ProteinID:
XP_054476343
LinkDB
All DBs
Position
19:complement(13023562..13038227)
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AA seq
1012 aa
AA seq
DB search
MFAWGEDGHRGFRLQDGAYSDGRPAADAGVGRLNLGYNIADLSAGRSALAFVKTNGNAFV
IRTNEREDGTRVKGKQKFIKYKERILAVGCGDDMVILLSEGGEVLCVDTAQTYNPKPLKA
LSNIQVSQVACGSQHSVALTKGGQVYTWGQDSRGQLGLGRRKPGANSPQHLRSLSGLPLV
QVAAGGEQSFALSVSGGVSGWGRNDRGQLGLGDTTDRHTPTPVHCLNMKTTIHISCGKDH
TAILTKNGAVFTFGSGQYGQLGHNSFSDELRPRLVAELLGAKVTKIACGRHHTLVLTDSK
KVYSFGCGEQGQLGHGEESHPSVPLPVQLTQDTDDARVRNIFAGGNCSFAACASNEDVSK
QANADGVNNKTQHRLDDMIDKWTSKCDSKSWKKIKQEIHRTFSSASCVNISFLEQSKDKH
FQTSTKYPGLNLSLARLAFEKLVKKDNVFAEVEAAVLLLLPSLDKKPLAVEGLRIYLLLN
ELLHVIQRHEQRRTSTELAEAVAAAVLNLSADSLQVIGDWWSSLPSSTMVEHVNVWKQAL
SVILSLKPVPRNSGVRNLLLVLQYMYNANSRIAEPQRMPERDFCLLIDKNFLNQDLQLWR
SRSQHKYMHAEPLVLCSFPILMDLESKKYVFDLNADYTKVIKIMKSPGKTFLDFGCPVSG
DMFYELDLRRASILEDTFKQLAAAHHSYYKIPLVVYFDENTAFDNLYXKDFFHEVFHEMM
SAETGMFMLNDSNTMAWFPSKATEEDQRYLQFGVLCGLALYNECIIHLPFPLALFKKLLG
VKPSLEDMIDFSPRVGESLLNILEDYDDDDIKNLYMDFLINWDGTEVDLDPKNPEKPLTG
ENKKEFVNAYVNHAFNTSVEGLFQEFKRGFFQVCDQDLVKLFRPKELQEVLVGKDFHDWA
KLKQNTGYEGEYNTTPPHPTIQMFWEVFDELTEDQKKAFLWFVTGFERVPILGMETMKMT
VRVTQVQDHSYDQCYPETHTCYSTLELPLYSTKEIMHTKLTEALSNNRRIYK
NT seq
3039 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcatggggagaggacggacaccggggcttccggctgcaagacggagcttacagc
gacggcaggccggcagcggacgccggggtcggtcggttaaacctcgggtataacatcgcg
gatctgtccgcgggccgcagcgcgctcgcattcgtcaaaacaaacggaaacgcgttcgtc
attcgcacgaatgagagggaagatgggaccagagttaaagggaaacagaagttcataaag
tataaagagaggattctggctgtgggttgtggtgatgatatggtcatactgctgtctgag
ggaggggaagttctctgtgtggacacagctcaaacctacaatccaaagccactgaaagct
ttgagtaacatacaggtgtctcaggttgcttgtgggagccagcactcagtggccctcacc
aaaggtggccaggtgtatacatggggccaggactccaggggccagctgggtctggggagg
aggaaacccggcgccaactcaccccaacacctcagatctctgtcggggctccccctggtc
caggtggctgcagggggagagcagagcttcgccctctccgtctccggaggcgtgtccggg
tggggcagaaacgaccgcgggcagctcgggctgggagacacaacagacagacacacgcca
actcctgttcattgtctgaacatgaagacaaccattcacatttcctgcggaaaggaccac
acggccattctgacgaagaatggtgcagtgttcacattcggctccggtcaatacggacag
cttgggcacaactctttcagcgatgaactaagacctcggcttgttgcggagctcttgggg
gcaaaggtcaccaagattgcatgtggacgacatcacacgttagtgttgacggactccaag
aaggtctactccttcggctgtggagagcaggggcagctgggacatggagaggagagtcat
ccgtctgtgccgctacctgttcaactaacacaggacacggatgatgctcgagttagaaac
atcttcgcaggaggaaactgttcgtttgcagcgtgtgcatccaatgaggacgtttctaag
caggcgaacgctgacggtgtcaacaacaaaacacagcatcgtctcgatgacatgattgat
aaatggacctccaaatgtgattcaaagtcatggaaaaagatcaaacaggaaatccacagg
acgttttcttctgcatcctgtgtgaatataagcttccttgagcaaagcaaagacaaacat
ttccagacctccacaaagtacccgggtttgaacttgtcactcgcacgactcgctttcgag
aaactggtgaaaaaggacaatgttttcgccgaggtcgaggctgctgtcctgctcttgctt
ccttcccttgataagaagccactggcagtggaggggttaaggatctacctgcttctcaat
gagctcctgcatgtgatccagagacatgaacagcgtcgaacgagcacagagctcgctgag
gcggtcgctgccgccgtcctaaacttgtctgctgacagtctccaggtcataggggactgg
tggtcctcactgccgtcctccaccatggttgaacatgttaatgtgtggaagcaggccctc
tcagtgatcctgtccttaaagcctgttcctcgcaactctggagtcagaaacctgctgcta
gtcctccagtatatgtacaatgccaacagcaggatcgcagaaccccaaagaatgccagaa
agggacttctgtttgttgattgacaaaaactttctcaatcaggatctgcagctttggcgt
tcacgatctcaacacaagtacatgcatgctgagccacttgtcctgtgtagctttccaatt
ctgatggatctggagtcaaaaaagtatgtttttgacctgaatgctgactacaccaaggta
atcaagatcatgaaatccccaggaaaaacatttttggattttggatgccctgtctctgga
gacatgttctatgaactggacctgaggcgagcatcgattttggaagacacctttaaacaa
ctggctgctgctcatcacagttactacaagattccacttgtggtttattttgatgaaaac
actgcattcgataatctctacnaaaaagacttttttcacgaagtgtttcatgagatgatg
tcagctgaaactgggatgttcatgctcaacgactccaataccatggcatggttcccctcc
aaagcaacagaggaggaccagagatacctccagtttggggttctgtgcggattggctctg
tacaacgagtgcatcatacacttacccttcccgttggctctgttcaaaaagctgctcggt
gttaagccttcactggaggacatgatcgacttcagtccacgcgttggagagagtctgctg
aacatcctggaagattatgatgatgatgacataaaaaacctctacatggattttttgatc
aactgggatggcacagaggttgaccttgaccctaaaaatcctgaaaagccactgacgggg
gaaaacaagaaggagtttgtgaatgcctacgtgaatcatgccttcaacacatcagtggag
ggtctgtttcaggagttcaagcgaggcttcttccaggtgtgtgaccaggatttggtgaag
ctgttccgaccaaaagagctgcaggaagtgctggtgggcaaagacttccatgactgggca
aagctgaaacagaacacaggttatgagggggagtacaataccacaccaccacaccccacc
atacagatgttttgggaggtttttgatgaactaactgaggatcagaagaaagcttttctt
tggtttgtgactggctttgaaagggtgcccattcttggcatggaaacgatgaagatgaca
gtcagagttacacaagtccaggaccactcttatgaccagtgctaccctgagacgcataca
tgttactcaaccctggagctgcccttatactcaaccaaggagatcatgcacaccaagctg
acagaggccctgagcaacaatagaagaatctacaagtga
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