Anoplopoma fimbria (sablefish): 129108586
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Entry
129108586 CDS
T09102
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2 isoform X1
KO
K10140
DNA damage-binding protein 2
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03420
Nucleotide excision repair
afb04115
p53 signaling pathway
afb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129108586 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
129108586 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
129108586 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129108586 (ddb2)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129108586 (ddb2)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
129108586 (ddb2)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
129108586 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_Prp19
WD40
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_IFT140_1st
EIF3I
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
129108586
NCBI-ProteinID:
XP_054476428
LinkDB
All DBs
Position
19:complement(551879..556029)
Genome browser
AA seq
491 aa
AA seq
DB search
MKTRPTKSADASESKAKLRKRTGESSAPTLSKKLRTRKDGETSKQGPPVKSAGVQRRGAY
GSILHYIYRSTLGQSLHSQMRQCLQEPFVRSLSSYHFQGATSPFNRRITCLEWHPTHPTT
LAVGSKGGDIYLWDFEAPAKKVFLQGNGAGDFIGGMKFCPTDLSKVYVASGEGTLTVQSF
EGRTPTVLSRTQDCGHEHHNVCYWFCCVDVSVSRQMLVTGDNVGQLTLLGLDGQKIFSDK
LHKAKVTHAEFNSCCDWLLATASVDHTVKLWDLRNIKDKKSFLHEMPHEKAVNSAYFNPL
DCSKLLTTDQYDQIRVYSSPDWSKPQHIIQHPHRQFQHLTPIKATWHPVYDLIVAGRYPD
DRVCPGDQRTIDVFDSNTAELVCQLQDPSASGIKSINKFNPMGDIIGSGMGLTVLVWDRD
KSLNDDRPRAEEETSTSSDSLRGQQRSRQRSSRDRRAPAMDAKLKKKLASLEELETKTVH
TKQKQTQTRKK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacaagaccgacgaagtccgcagatgcatctgaatcaaaggctaaactgaggaaa
agaaccggggaaagttctgctccaactctctccaagaaactccgaaccagaaaagatgga
gaaacatccaaacaagggcctcctgttaagtctgcaggagttcagaggagaggagcgtat
gggagcatcctgcactacatctacaggagcactctgggacagagtctccactcacagatg
agacagtgtctgcaggaaccttttgttcgctcgctgtcgtcctatcatttccaaggagct
accagccccttcaaccggaggatcacctgtctggagtggcatcccactcatcccaccact
ctggctgttggctctaagggcggtgacatatatctgtgggattttgaggcacccgcaaaa
aaagtatttcttcaagggaacggagcaggagactttattggagggatgaaattttgcccg
acggacctttccaaagtctacgtggcttctggtgagggcacattgaccgtgcagagcttt
gagggccgcacgcccaccgttctgtccagaactcaagactgtggccacgagcaccacaat
gtttgttactggttctgctgtgtggatgtgtctgtaagtcgacagatgcttgtgaccgga
gacaatgtgggacaacttacactcctgggtttggacggccaaaagattttcagtgacaag
ctgcacaaagccaaagtgacccatgcagagttcaactcctgctgtgattggttgttggcg
acggcctcagtcgaccacaccgtgaaactttgggacctgagaaacatcaaagacaagaag
agcttcctccacgagatgcctcatgagaaagccgtcaactccgcctatttcaacccgttg
gactgctccaagttgctcaccaccgatcagtacgaccagatccgggtctactcctctccc
gattggtcgaagcctcaacatatcatccaacatccacacagacagttccagcatctcaca
cccatcaaggccacatggcaccctgtctatgacctcatcgtggcgggccgctaccccgat
gaccgggtttgccctggagatcagaggaccatcgacgtctttgactccaacacagccgag
cttgtgtgtcagctgcaagatcccagtgcctcaggaatcaaatctatcaacaaattcaac
ccgatgggtgacatcattggatctggaatgggtttgacggtgctggtgtgggatagagac
aagtcactgaacgatgatcggcccagagcggaggaggagacctcgacctcgtcggacagt
ttaagaggccagcagaggagtcggcagcgctccagcagggacaggagagctcctgctatg
gacgcaaagctcaagaagaaactggcttctctggaagaattggagaccaagactgttcat
accaaacaaaaacaaacgcagacgaggaagaagtaa
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