Anoplopoma fimbria (sablefish): 129108607
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Entry
129108607 CDS
T09102
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
129108607
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
afb01009
]
129108607
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
afb04515
]
129108607
Protein phosphatases and associated proteins [BR:
afb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129108607
Cell adhesion molecules [BR:
afb04515
]
Cadherins
Protocadherins
129108607
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
Cadherin_CELSR2_9th
Cadherin_2
Epiregulin_C
TM_ErbB1
Motif
Other DBs
NCBI-GeneID:
129108607
NCBI-ProteinID:
XP_054476456
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Position
2:complement(22988948..22991976)
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AA seq
889 aa
AA seq
DB search
MFNSRHPSLSKRGGIWGFCILLLYTSPLSCFANFSQAKELIYKIKEGLPRGTFIGSIGVD
LNLDFTVEPPFLFSLPQKKVSGQFVNLNNTTGELYTSATEIDRETFCSDNSGGRGCVLSL
DVFVLPQQYFQLVKVKIFIEDVNDNRPKFPVDEICISVPENSPINARYAVEQSAVDPDLG
IHGVQTYWLVNDFGMFTLDVEENEGGELTPFLIVTEALDRETQAEYITDIIAEDGGTPPL
LGAATLKIVITDVNDNCPQFTDSQINVTLHGNATKGAHLARLHAFDPDLGANAQISYAYS
ERVPRDTRSLFHLDRISGVIKLAGKIDTGTTTFYKLTILANGAGCIPAVAAVSVHIIKVV
TGPPAVIPRYIAPEKDGVVSIKESEPEFSPIAFFTVKNIDKNQKVDCHLEGSGPFRLVPY
QLLKNEYLLETTEPLDFERTQEYELIVVAKNSRELVIKTFLKVQVLDENDNAPVFQQSWV
EISVEENNPPNTFLTQLQATDPDSESSGEVIYLLGGDAPGVFVMDRVTGVLTVTTSLDRE
EKETYRFIARAVDQGTPRRESIATVVVSVQDRNDNSPRFINKDFTFFVPENFPGYGEIGV
LSVTDADAGENGWVALSILNGSDIFLIDTGRGALRAKTSLDREQQGTYQLWIEAVDGGEP
ALSCVTMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPNTPTGTSITEVYAVDKDTGMNAVI
AYSIVKRKGGEPGSFAIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYSTVMVNFF
VNETVSNESYIQSLLTREAEIEVEERPWYKGQMTEGPERYELLPCQPLLIALSVTCLGLF
FSVVTLISYICCRRYKKQRKKKSEVEIPLKMKNDSIKVVNRKLRQISNI
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacagcagacaccccagccttagcaaaagaggagggatatggggattttgcatc
ctcttgctttacaccagccctctttcctgttttgcaaatttcagccaagcaaaagagctg
atctataagataaaggagggattacccagggggaccttcatagggtccattggagtagac
ttaaatttggatttcactgtggagcccccctttttgttcagtctcccgcaaaagaaggtc
agtggacagtttgtgaacctaaataataccaccggggagctttacacatctgcaacggag
attgacagggagaccttttgctctgataactcagggggacggggatgtgtcctctcactg
gatgtgtttgtgttgccccagcagtactttcagctggtcaaagttaagatcttcattgag
gatgtgaatgacaacaggccaaagttccctgtggatgagatctgtatatctgtcccagaa
aactcaccaatcaatgctcgttatgcagtggagcagtcagcagttgacccggacctcggt
attcacggagtgcagacctactggcttgttaatgactttggcatgttcacactggatgtt
gaggaaaatgagggaggtgagctgacacccttcctcattgtgacggaggctttggacaga
gagacccaggctgaatacattacggatatcattgcagaggacggagggacccctcctctg
ctcggggcggctactttgaaaattgtcatcacagatgtgaacgataactgcccccaattc
acagattcgcaaattaatgtcactctgcatgggaatgccaccaaaggggctcatttggca
cgactgcatgcttttgaccctgaccttggtgctaatgctcagatcagctatgcttacagt
gaacgtgtgccaagggacaccaggagcttgttccatttggacagaatctcaggggtgatc
aagctagctgggaaaatagacactggcacaaccacgttttacaaactcaccattctggcc
aatggagctggttgtatccctgcagtagctgctgtttctgtccatatcatcaaagttgtt
acaggaccccctgctgtcataccccgatacattgcaccagaaaaggatggggtggtgagc
ataaaggagtcggagccagagttttctccaattgctttttttacagtcaaaaacattgat
aagaaccaaaaggtggattgtcatttggaagggtctggtcctttcaggctcgtcccctat
cagcttttaaagaacgaatacctgctggagactacagagcccttggactttgagaggaca
caggagtatgagcttattgtggttgccaagaattctcgagagctcgtcatcaagactttc
ctcaaggtgcaggtattggatgagaatgataacgcaccagtgtttcagcagtcttgggtg
gaaatatctgtggaggagaacaatccaccaaacacctttctgacccagctccaagccacg
gatccggacagcgaaagcagcggggaagtcatctacctccttggcggtgacgccccaggg
gtctttgttatggatcgtgtgacaggcgtcctgactgtgaccacatcgctggaccgcgag
gagaaagagacgtaccggttcatagcgagagcggtggaccagggtacgcccaggagggag
tcgattgcaactgtggtggtgagtgtgcaagatcgcaatgacaacagtccacgcttcatc
aataaggacttcacgttctttgtgccagagaacttcccggggtacggtgaaattggggtc
ctctcagtgacggacgctgatgcaggtgaaaatggttgggtggccctttccatcctcaac
ggcagcgacatcttcctgattgacacaggccgaggtgcgctgagggccaagacatcactt
gaccgtgagcaacaagggacatatcagctgtggatcgaggctgtcgatggtggggaacct
gcgctttcctgtgtaactatggtgaccgtgctgttgttggatgtaaatgacaacccgcct
attgtcctcttcccccagtccaatcagtcttacatgctagttctacccaatacaccaaca
ggaacatcaataacagaggtctacgctgtggataaggatacaggcatgaatgctgtgatc
gcctacagtattgttaagaggaaaggtggcgagccaggttcctttgccattgacccagaa
acagggaatatcacattaaagagggaactcagcaaccgggggctctacagccttctggtg
aaggtcagtgaccatggtcagcctgagccgctttactcaacagtgatggttaacttcttt
gtcaatgaaacagtgagcaacgagagctacatccagagcctgctgaccagagaggctgaa
attgaggtagaggagaggccctggtacaaaggccagatgacagaggggcctgagaggtat
gagttgctcccctgtcagcctctcctcattgctctttcagtaacatgtctggggctgttc
ttctcagttgtcacactgatatcgtacatatgctgtaggagatataaaaagcagcgaaag
aaaaaatcagaggtggagatacctttaaaaatgaagaatgactcaataaaggttgtgaac
agaaagctcaggcagatctcaaacatctga
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