Anoplopoma fimbria (sablefish): 129108673
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Entry
129108673 CDS
T09102
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129108673 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129108673 (edc4)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129108673 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
129108673 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_THOC3
Beta-prop_EML_2
Beta-prop_IFT122_1st
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WDR55
FilR1_N
PIN_8
Motif
Other DBs
NCBI-GeneID:
129108673
NCBI-ProteinID:
XP_054476529
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All DBs
Position
19:complement(12552327..12579807)
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AA seq
1402 aa
AA seq
DB search
MNPVSPFPLQMASNSNIDIEGATQHLRDILKLDRPGNSTDASSDGLRMPSFNGELNGLLG
AAGLLGGTDRSSMSDCTQPISTDLSSTQECQIICLSGDDGSTCFPITSNNVEIVASQDTS
INSKARGSNKVKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVSFAE
RSLLKGFTGAVTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKILDQIVVHIRRPEDSP
LNSHRRLIWCPFIQDDNEENQDDTSQTLALLHEDVAEVWDLEVLRANHSSWPVDDTDVKE
GLITIKGHTQRVSEGALSPDGTVLATASHDGYIKFWQIYIEGVQDKPRCLHELRPHGGRP
LSCLLFCDNHKRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDLFNSSVLP
SLKASLDLAAEFLILTDVQRKVLYVMELRQDLDKGKASFTAVSEFLLTHPVLSFGIQDVA
HCRLRHTEVLPAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPYLGSS
SALFLPHSDSQDGFAGFSDHLTDQSSDKESGNGSQTDLRKIPSLPAPTDFLSNSVASSGT
KLMTPDAFMTPSTSVPASPGSSASSLTIVTAMSTNSDSTNRAMDEVSQSPNRADNINSSS
SSLALSTSTSSPRAVSAVLLPGLESLQAIASPSGPLALDSPQVLDSPLLPPLASPTRARS
PDVISSASTAMSQDMPEIASQTLQLQRSLVSSLEPLPLSALQTDSMASAASALHLLTSPR
TSNNGLLPPELGGADGPVGGSVESEPRLSHTPSLLENALSQENPGVGGGSSDGGVSHTPW
PAAPDITRETRNSLRDNGLGDCSREESKDRHLSSPYHRRSYHLTQNDSQDAGGEQSDPDD
EVANLASSSANCGSRSSHRLPVKDWKTSPRASPKVKRKTKKDDSELSQSRQMDSGQMNAE
VQDELLMLLRSQQRELTDLRGQIEAMQSTIMAQVEHVLTNHQEQEQRRLERVLAESQNHQ
QQLQEQLSQQLSNTLSSVLTNRMDKVLREEMKKTVPQSISKSLEPVTGQLSNTIAAKLTA
VEITLKDNVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQGIVLPVFERGCQSMFQQ
INDSFKQGTQEYIQQLESHMKSKKQREQETRDPLISQLQQTIDSFQSSTDQLANNITANV
RAEVQHQIQQMVGNLQESILSHVQRIVKGEVSMAMKEQQAVVTSSIMQAMRSAAGTPVPT
AHLDYQTQQANMLQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQHPCPLSQP
VLLSLIQQLSSNLTTRSELKISYLEDAVMNLDHGDPLTRDHMSSVLAQVRPKLFTFLQQD
PHSPLSKRARRLMMMLQGLVSH
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaacccagtttcccctttccccctacaaatggcgtccaattctaatatagatatcgag
ggtgcgacccagcatctccgggacatcctcaagctcgaccgtcccgggaacagcaccgat
gcatcaagtgatggcctgagaatgccatctttcaatggagagctgaatgggttattggga
gcagcaggccttctgggaggcactgatcggtcatccatgtcagactgtacccaacccatc
tccacagacctcagcagcactcaggagtgtcagataatctgcctttctggtgatgatggc
tccacctgtttccccatcacctccaacaatgtggagatagtggcaagtcaagataccagc
atcaacagcaaggcacgtggcagcaacaaggtgaagattcaacctgttgccaagtacgac
tgggaacacaagtattattatggcagactgatagccgtgtccaactccttcctggcctac
gccatccgaggagccaacaaccacgcaatgattcgtgtcctgagcgtgagttttgccgag
cgctctctactgaagggcttcaccggagctgttacagatctagcttttgcccacctggac
tcctcgctgttgggctgtgtagacgaagcgggcaacctgatggtctggcagctcacctgc
actggaagcaagatacttgatcagattgtggttcatatccgacggccagaagactcaccg
ctgaactcccaccgtcgcctcatctggtgcccgttcatccaggatgacaacgaggagaac
caggacgacaccagccagaccctagccctcctacatgaagacgtggctgaggtgtgggac
ctggaggtcttgagagccaaccacagcagttggcccgtcgatgacacagatgtaaaagaa
ggcctcatcacaatcaagggacatacccagcgggtcagtgagggggccctgtctccagat
ggaaccgtgttagccacagccagccacgatgggtacatcaagttctggcagatatacata
gaaggggtacaggacaagccgagatgtcttcatgaattgcggccccacggaggacgtccc
ctctcctgccttcttttctgtgataaccacaaaagacaggaccccgaagttcctttctgg
cggtttcttataactggagcggatcagaaccaggagttgaaaatgtggtgcactgtttcc
tggacctgcttacagaccatcaggttttctccagatctgttcaattcatcagttctgcca
agtctgaaggccagtctggacctcgctgctgagtttctcatcctcaccgacgtacagaga
aaggtcctgtatgtgatggagctgcggcaggatctggataaaggcaaggccagtttcaca
gcggtgtcggagttcctgctgactcaccctgtactcagctttgggatccaggatgttgcc
cactgccgattgcgacacactgaggttctccctgcagaggaggagagtgagagtatgaca
acagagggcactcaaggaccaacagagtccaagtctgggatccaaattaaactctactgt
gtccacaccaagagtctgcaggatgtccagatctggtttcagccatacttgggttcgagc
tctgctttattcctgccccattctgattctcaggatggatttgcagggttttcagaccat
ctcactgaccagagctccgacaaggaatcaggaaatggctcccagaccgacctaaggaag
atcccatcacttcctgctccaactgacttcctgtcaaactcggttgccagcagtgggacc
aagctgatgactcctgatgccttcatgacaccaagcacctcggtaccggcttctcctggc
agcagcgccagcagtctgaccatcgtgacagctatgagcaccaactcagactcaactaac
agagctatggacgaagtcagtcagagtcctaacagagcagataacatcaacagcagcagc
agtagtctggcactctccacctccaccagcagcccaagagctgtttctgctgtgctgctg
cctggactagagagcctacaggcaatagcgtcccctagcggtcctctcgcactggacagc
cctcaggttctggattctcccctcctgccccctctggcctctccgaccagggcccgctcc
ccggacgtcatctcctcggcctccacagccatgtcccaggacatgccagagatcgcatcc
cagaccctacaacttcagcgcagcctggtgtccagtttggagccgttgcctctctctgct
ctccagacggacagcatggcgtctgctgcatctgccctgcacctactcacctcaccacgc
acatccaacaatggcctgttgccccctgaactcggaggtgctgatgggccagtgggcggg
tcagtggagtctgagccaagactcagtcacaccccgtctttactggagaacgccttatcg
caggagaaccctggggtcggcggtgggtcttcagatggcggtgttagccacacaccttgg
ccagctgcgcctgatatcaccagagaaaccaggaacagtctcagggacaatggtcttgga
gactgttcaagagaggagtcgaaggacagacacttgagctcaccttaccaccgacgctcc
tatcacctcacccagaatgacagtcaggacgctggtggagagcagagtgaccccgatgat
gaggtggccaacctggcatcatcctcagcaaattgtggctctcgttcttctcacagactg
ccagttaaggactggaagacctcaccacgagcctcgccaaaagtgaagaggaagaccaag
aaagatgacagtgaattgtctcagtccaggcaaatggattctggtcagatgaatgctgaa
gtacaggacgagctgttgatgctgctgcgtagccagcagagggagttaactgacctgcgt
gggcagattgaagccatgcagagcaccatcatggcccaagtagagcacgtcctcaccaac
caccaggaacaagagcagcgcagactagagcgagttctggcagagagtcagaaccatcag
cagcagcttcaggaacaactcagccagcagctcagcaacaccctcagctcggtgctaacc
aacaggatggacaaagtgctacgagaggaaatgaagaagactgtcccacaatcaatctct
aagagtctggagccagtgacggggcagctgagcaacacaatcgctgccaagctgactgct
gtggagatcaccctgaaggacaatgtcagcaaggtggtcaaatccaagaacacaactgat
gccattggtcgagcagcggccgaagcgatgcaggggcccatccaggcagcctacaaagac
gccttccagggcatcgtgctgcccgtttttgagagaggctgccagtccatgttccaacaa
atcaacgacagctttaaacaaggcacacaagaatacatccagcagctcgagagccacatg
aagagcaaaaagcagagagagcaggagacacgagaccccttgattagccagctccagcag
acgatcgacagcttccaaagctccaccgatcagctggccaacaacatcacggctaatgtg
cgggcagaggtccagcaccagatccagcagatggtgggaaatttgcaggagtctattctt
agccatgtgcagcgaatcgtcaaaggggaggtgagcatggcgatgaaggagcagcaggca
gtggtgacctccagcatcatgcaggcgatgaggtcggcggccggcacgcccgtccccaca
gcgcacctcgactaccagacgcagcaggccaacatgctgcagctcctccagcagggccag
ctgaaccaggccttccagcaggctctgtcggcgactgatctgaacctggtcctgtacgtg
tgtgagaccatcgactctcagcaggtgtttggtcagcacccctgccctctcagccagccc
gtgctgctgtcgctcatccagcagctctcctccaaccttacaacccgctctgagctcaaa
atcagctacctggaggacgccgtgatgaatctggaccacggcgacccgctgaccagagac
cacatgtcctcggtgctggcccaggtccgaccgaagctcttcaccttcctgcagcaggac
ccccacagccccctcagcaagagggcccggcgcctgatgatgatgctgcagggtctcgtc
agccactag
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integrated database retrieval system
