Anoplopoma fimbria (sablefish): 129108694
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Entry
129108694 CDS
T09102
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
129108694 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129108694 (rag1)
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129108694 (rag1)
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129108694 (rag1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1_ZnC2
RAG1_pre-RNase_H
RAG1
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_10
zf-C3HC4_4
U-box
zf-RING_2
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
129108694
NCBI-ProteinID:
XP_054476567
LinkDB
All DBs
Position
19
Genome browser
AA seq
1071 aa
AA seq
DB search
MAEESLETDGPRSSMPAELHHPHSKYSQWKFKLFRLKSMEKAPLPGETGPEEGALFGIPP
PAALNTELDNGIGPGSVMKLCLGGKSKENVEGPGRRVDIKLQEMDTHMNQLRCLCRLCGM
ALRKLKGPVHDVNGDLDEVSKCALRKMGCKFTSWPEIVFKVFKVDVTEDTESVHPLSFCH
RCWVVAIRGGGVCSFSRTRVPVWKPHSSTCHLCSPRKPSFQRTGRKRRKAIPRAQSLAKR
IRRDYGDSIAVGERRALRPFGDHHHGPVLRAWRKSSIQREQWVRNITKCQTHHLNTKLIS
ENLPVDYLFSFTCLVCDHLLSDPVQSPCGHLFCRGCILKFNHVLGPHCPGCNLPCTLDDL
TPPALAFLSALHSLSLLCPRSGCGKQVRLDSFKAHCLDHELDEQDDKQQSSELDNYLLTN
KGGRPRQHLLSLTRRAQKHRLRDMKNQLKAFADKEEGGDLKSVCQTLFLLALRSGNEHRQ
ADELEATMQGRGFGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQIFQPLHTLRNTE
KELLPGFHQFEWQPALQNVSTSCNVGIINGISGWTSSVDEFPADTITRRFRYDVALASAL
KDLEEDIMEGLRGSGMEDSACTSGFSVMIKESCDGMGDVSEKHGGGPATPEKAVRFSLTV
MSVSVLTGEEEEEVTIFTEPKPNSELSCKPLCLMFVDESDHETLTAVLGPIVAERNAMKE
SRLILSVGGLPRSFRFHFRGTGYDEKMVREVEGQEASGSTYVCTLCDSTRADASQNMVLH
SITRSHEENLDRYEIWRTNPFSESVDELRDRVKGISAKPFMETHPTMDALHCDIGNATEF
YKIFQDEIGEVYKKVNPSREERRSWRAALDKQLRKMMKLKPVMRMNGNYARKLMTQEAAD
AVCELVPSEERREALRELMRIYIQMKPVWRATCPAKECPDQLCQYTFNSQRFADLLSTTF
KYRYNGKITNYLHKTLAHVPEIIERDGSIGAWASEGNESANKLFRRFRKMNARQSKAFEL
EDVLKHHWLYTSKYLQKFMEAHKDSAKALQATIDPVESQDYEDMSLEVIDF
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagagtctggagacagacggtcccagatcctccatgccggctgagctccac
catccccactctaagtactctcagtggaagtttaaactgtttaggctgaagtctatggag
aaggcccctctgcctggtgagacagggcctgaggaaggagccttgtttgggatccctcct
cctgcagctctaaacacagagttagataatggcataggtccagggagtgtaatgaaattg
tgcctagggggaaaaagcaaggaaaatgtggagggccctggccggagagttgatattaag
ctacaggaaatggacacccacatgaaccaactcagatgcttgtgccgtctctgtggaatg
gccctgagaaaactcaaaggaccggtgcatgatgttaacggggatctggatgaggtcagc
aaatgtgctctgcgtaaaatgggctgcaagtttacaagctggccggagatcgtctttaaa
gtctttaaagtggacgtgacagaggacacagaatctgtccaccctctttccttctgccat
cgctgctgggtggtagccataaggggagggggcgtctgcagcttctccagaacaagagtc
cctgtgtggaaaccccactcctccacctgccacctttgctcccccaggaaaccttcattc
cagcggactgggaggaaaaggcggaaagccattcccagagcgcagagtctggcaaagagg
atcaggagggactacggcgacagcattgccgttggtgagaggagggccctgagaccattt
ggagaccatcatcatggtcctgtgctaagggcatggaggaaaagcagcatccagagagag
cagtgggtgaggaacatcaccaaatgccagacacaccacctgaataccaagctgatctct
gagaatctccctgtagactacctcttttctttcacctgcctggtgtgcgaccacctgctc
tctgatccggtccagtcgccctgtggacacctcttctgccgcggctgtattttaaaattc
aaccacgttctggggcctcactgcccgggctgcaacttgccctgcacccttgacgatctc
accccgccagctttagccttcttatcagccctgcattccctgtctttgctctgccccagg
agtggctgtggcaagcaggtcaggctagactcatttaaagctcattgtctggaccatgag
cttgatgaacaggacgataagcagcagtcatcagaacttgacaactacctgctaaccaat
aaagggggcagaccccgtcagcacctgctatcgctgacccgtcgtgcccagaagcatcgg
ctgagggatatgaagaaccagctgaaggcgtttgcagacaaagaggaaggtggcgacctg
aagtctgtgtgtcagactctgtttctgcttgctctgaggtctgggaatgaacaccgtcag
gcagatgagctagaggccacgatgcaaggcagaggatttgggttgcatcctgctgtgtgc
ttagccattcgggtcaacacattcctgagctgcagccagtatcacaagatgtaccggact
gtcaaagccaccagtggccgccagatctttcaacccctgcacaccctgcggaacacagag
aaggagcttctccctggctttcaccagtttgaatggcagccagctctccagaacgtgtct
acatcttgcaatgttggcattattaatgggatctctgggtggacttcctcggtggatgaa
ttcccagctgacaccatcactcggcggtttcgctacgatgtggctctggcgtcggcatta
aaggatctggaggaggacatcatggaggggctgagagggagtgggatggaagacagtgct
tgcacctcaggcttcagtgtcatgatcaaggaatcctgtgatggcatgggtgatgtcagc
gagaagcacggcggaggaccagctactcctgagaaggctgtgcgtttttctctcactgtc
atgtctgtctctgtcctcacaggtgaggaggaggaagaggttaccatcttcactgagcca
aagccaaactcagaactgtcttgtaagcccctttgcctgatgtttgtggatgagtcagac
catgagacactcacagctgtcctgggtcctatagtggctgagcgtaatgcaatgaaggag
agcaggctcattctgtccgtgggcggattgcctcgctccttccgctttcacttcagaggc
acgggatatgatgagaagatggtgcgcgaggtagagggccaagaggcctcagggtccacc
tacgtctgcactctatgtgactccactcgggcggacgcctctcaaaacatggtgctacac
tccattactcgcagccatgaagagaacctagatcgttacgaaatatggagaaccaacccc
ttttctgagtctgtagatgagctgcgggacagagtcaaagggatctccgccaagcccttc
atggagacccatcccacaatggatgcattgcattgtgacattggcaatgccactgagttc
tacaaaatcttccaggacgagatcggggaggtgtacaaaaaggtcaacccaagccgggag
gaacggcgcagctggagggcagccctagataaacagctgaggaagatgatgaagctcaag
ccggtgatgaggatgaatgggaactatgcccgcaagctaatgacccaagaggctgcggat
gcggtgtgtgagttggtgccctcagaggagaggagggaggccctgagggagctgatgagg
atctacatccagatgaagcccgtgtggcgcgccacctgccctgccaaggagtgtcccgac
cagttgtgccagtacacctttaactcccagcgctttgccgaccttctctccactaccttc
aaatacaggtacaatggaaagataaccaactacctgcacaaaacccttgcccatgtacct
gaaatcatagagcgagatggatccataggagcctgggccagcgaggggaacgagtcggca
aacaagctgttcaggcgtttccggaagatgaatgcacgtcagtcaaaggcctttgagctt
gaggacgtgttgaaacatcactggctctacacttccaagtacctgcagaagtttatggaa
gctcacaaggactctgccaaagctctgcaagccaccattgacccagtggagagccaggat
tatgaggacatgtctctagaagttattgacttttga
DBGET
integrated database retrieval system
