Anoplopoma fimbria (sablefish): 129108715
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Entry
129108715 CDS
T09102
Symbol
lingo1a
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129108715 (lingo1a)
Membrane trafficking [BR:
afb04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
129108715 (lingo1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
LRR_4
LRR_1
I-set
Ig_3
Ig_2
ig
LRR_Zer-1
LRR_9
LRRNT
Ig_C17orf99
Motif
Other DBs
NCBI-GeneID:
129108715
NCBI-ProteinID:
XP_054476590
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Position
19:complement(22519419..22524681)
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AA seq
624 aa
AA seq
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MSFLKVTDKMAAGEATGHSYLVACWQPILILMLGTVLSGSTTGCPSRCECNVQERSVMCH
RKKLLTVPEGIPAETKLLDLGKNRIRTINPDEFATFANLEHLDLSENTISTIEPGAFNNL
YGLRTLGLRSNKLKLIQLGVFTGLSNLTQLDISENKIVILLDYMFQDLYNLRSLEVGDND
LVFISHRAFHGLSSLEHLSLEKCNLSSVPTEAFTHLHSLITLRLRLLNINVIRDYSFKRL
YRLKVLEIANWPYLDTMTPNCLYGLNLTSLTIANANLTTIPYVALRHLVYLRFLNLSYNP
IHTIEGNKLHDLLRLQEFHLVGGRLAMIEPYSFRGLNYLKILNVSGNSLSTLEESAFHSV
GNLETLALYDNPLACDCRLLWVFRRRWRLNFNRQQPTCASPEFVQGKEFKDFPDVLLLNY
FTCRKSRIRDRKPQQKFVDEGAIVHFACQADGDPAPVIMWLSPQKKFINTKTIGRLSVLP
DGTLEVRYAQIQDNGTYVCIASNAGGNDTSLAHLHIHSYSPDWPHQPNKTFAFISNQPTE
TGANGTRANAPFPFDIKTLIIATTMGFISFLGVVLFCLVLLFLWSRGKGNTKHNIEIEYV
PRKSDAGMSSSQVDAPRKFNMKMI
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttttgaaagtaaccgataagatggcggccggggaagcgactgggcacagctac
ctggtggcttgctggcagcccattctgatcctgatgctgggcaccgtgctgtctggctcc
actacaggctgtccatcccgctgcgagtgcaacgttcaagagcgctcggtgatgtgccac
cgcaagaagctcctgacagttcccgagggcattcctgcagaaacaaaactgctggacctt
ggcaagaaccgaatcagaaccatcaacccagacgagtttgccacctttgccaaccttgaa
catctggatctcagtgaaaacacgatctccactattgaacctggagccttcaacaacctt
tacggtttgcggacattgggtctgcgtagcaacaagcttaagctgatccagctcggtgtc
ttcaccggtctgagcaatctcacacagctggacataagtgagaacaagattgtcatcctg
ttggactacatgttccaggatttgtacaacctgcggtctttagaggtgggtgacaacgac
ctggttttcatctctcaccgtgcttttcatggcctaagtagccttgagcacctgagtctt
gagaagtgcaacttgtcctctgtgccaacagaggcttttacccacctccacagtttgatc
acgctcaggctgcgcctcctcaatataaatgtcatacgggattattccttcaaaaggctc
tatcggctgaaagtgttggaaatagccaattggccatatctggatacgatgaccccaaat
tgcttgtatggattaaatctcacctccctgaccattgcaaatgccaacctgaccacaatt
ccttatgtagccttgcggcacttggtttatttgcgctttcttaatctttcatataaccct
atccataccattgaggggaataagctccatgatcttttgcgtctgcaggaatttcacctg
gtaggtggcagactggcaatgattgagccctactctttccgtggtctaaactacctgaag
attctcaatgtgtctggaaactcccttagcactttggaggagtctgctttccattcagta
ggcaaccttgaaacccttgccttgtatgataatcccctggcctgtgactgccgactgtta
tgggttttccggcgacgctggagactcaacttcaacaggcagcagcctacctgtgcctcc
cctgagtttgtccaaggcaaagaattcaaagacttcccggatgtcctgctgctaaactac
ttcacttgtcgcaagtctaggattagagatcgcaaaccccagcagaaatttgttgacgag
ggagccattgttcattttgcttgccaagcagatggagatcctgccccagtgataatgtgg
ctgtccccgcagaaaaagtttatcaacaccaagacaattggaaggctctccgtcttgcca
gatggtaccctcgaggttcgctatgcccaaattcaagacaatggtacatatgtgtgtata
gctagcaacgcaggaggaaacgacacctcccttgctcacctgcacattcatagctactca
cctgactggccacaccagcccaacaagacctttgccttcatctccaaccagcccacagaa
actggtgctaacggtacaagagccaatgcccctttcccctttgatataaagacgttgatc
attgcgaccacaatgggcttcatctcttttctcggtgtcgtcttgttttgcctggtactg
ctcttcctttggagcagaggtaaaggcaacaccaagcacaacattgagatcgagtatgtg
ccacggaaatcggacgctggcatgagcagcagccaagtggatgctcctcgcaagtttaac
atgaaaatgatttaa
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