Anoplopoma fimbria (sablefish): 129108802
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Entry
129108802 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: C-myc promoter-binding protein-like
KO
K20163
DENN domain-containing protein 4
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129108802
Membrane trafficking [BR:
afb04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
129108802
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
dDENN
uDENN
PPR_2
DUF2464
PPR_3
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
129108802
NCBI-ProteinID:
XP_054476701
LinkDB
All DBs
Position
2:complement(2625890..2703756)
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AA seq
1975 aa
AA seq
DB search
MMEDKGPRVADYFVVAGLTDPSTPLDQEIHFDDVCHKTAKPKAPITDVAVLIRSMGEEAP
PGFTCVEETPSGHSADLNNGGLMAPQIFLCYRRGRDKPPLTDLGVLYEWKERLMQGCQLI
QTTPSGRPANISGNSSQRIYVTYRRAPESQPHSALAVTDICIIIPSKGETPPHTFCKVEK
NLNSSMWGSSVYLCYKKSVAKTNMIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATI
ECWPATTKYSLPVFSTFVLTGASGEKVYGAAIQFYEPFPPECLTDQQRDQLGLLSPDPQK
PSSTSSSSSSSLSSSSSSTRTGTTTSSSTNTSATIPRSVHTNKCICLLSHWPFFDAFRKF
LTFLYRYSISGPHTLPIEKHISHFMHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPL
SGGRFSTLLQNLGPENAVTLLVFAVTEHKILVHSLRPAVLTSVTEALVSMIFPFHWPCPY
IPLCPLALADVLSAPCPFIVGVDSRYFDLYDPPPDVSCVDLDTNTIFHNDDKRALTWKIL
PKKACKNLMNVLSNLYQQLVDGQQRPDGLLELSMSYSSELSCGKSLHTLELEIQEAFLRF
MAAILKGYRSFLRPITQAPSEKATDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFIRFI
EECSFVSDKDASLAFFDDCVDKLYNSERSADKGGKVDSERPEESRLIETDESQRSEHTVF
ITPPELPPLPEGEEYPLCYRYDGFPVLSLDLFDPVEGLRTPSSRLAARQSCPTSPAPMFR
RTKQEIKSAQKIAKKYSSVPQLWSKCLLRHCYGLWFICLPAYVKVCHSKVRALRTAYDVL
RKMQAKKLQPPDEVCYRVLMQLCGQYGQPVLAVRVLFEMKKAGVHPNAITYGYYNKAVLE
STWPSSTRGGYFLWMKLRNVVLGVAQFKQALRRHAPFTQSPLSDGSDVDSLEICADTNLG
PFNTESARVDPTDDRSSTGDQSDLGYNSLSKEEVRRGDPGAPDAAAASDKDDKKESDCSS
LSETESTKGSKDFLPQLDVELHSSFKPRGIVRSSCPYDDPSCKPKSSVSAGHVAGLLFTS
SLDEIGEVHAHSLLRRHHSALEEVVGSAGSGSRARRLSGDTVGSSGSGGTTTVLGLGMSQ
GETDPDKIAGHLGADVKILSGANFSKSTRPRSLALSGMDHREEDEEGQDSSDEDRTNTEA
IFDLEDLDLDKPPTGTSIRSNKPNRSRKKPVERSVSYGGVSAPKRTDIQAGYDPLSLLAA
ESQTDRPDEDRYPEEDEAGTPSARRHLAREIELYMNHMGSPLSSRTPSLDLQDLTSPLLL
HPSSLSXPRRASLPHGSPXRAAGVTRSRTFHPPSPSRPVSRQRLLSSPSIRSSSTTPSAS
PRPSPCRDRADRGSLASPSSSSFALDTLITPTLDVFKTSMVSAGKGVAEKASRWYSRLAT
YTTPTKDGHSDRLSVSSLGIGDPDCSSLLDEEDCGESEGSVISPQRNGPAGPRRSPRRSP
LRSRLDSPSAGSSIGRPTSLIPGCVLSPPGFPLPDKSDLGSSRYTSNTSIFNNYAMELLI
SSCSRCKTCDCLVYDEEIMAGWTADDSNLNTTCPFCGNPFLPFLNVEIRDMRGPGRLFLK
GSPSVDEAMTSSYSASTGLDTGTSTLSTPCPTTCPTTAVFPPSPVMADQECSGSGRTRPS
RAQGISIPSPTPGPPMARSVSAFGPLDEASLLNRCVPTSGSLPSRLNETTDPLNMEWRLH
NPEPVTVPYLSPLVLWKELESLLENEGDPVITEADVVDHHPIIYWNLVWYFRRLDLPSNL
PGLMLTSDHCNRDSQVPRHWMSEDSKHVLIQILWDNLKLHQDSVQPLYILWNTFNVGYPL
SRLVPEEEKPFSEDLLQSVVKSIQRNDVGRPMAQLLQLLGQTLGVKRQRSLYRDVLFLSL
VALGKDNIDIDAFDREYKLAYDRLVPSLVKLTHNCDRPPSTGVMECRRTFGEPYL
NT seq
5928 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacaaaggccctcgtgtagccgactactttgtggtggccggtctgacggac
ccgtccacgccgctggaccaggagatccactttgacgacgtctgccacaagaccgccaag
cccaaggcgcccatcaccgatgtggcggtgctgatccgctccatgggcgaggaggcgccg
ccggggttcacctgcgtggaggagacgcccagcggccactcggccgatctcaacaacggc
ggcctcatggcgccccagatcttcctgtgctacaggcgaggtcgagacaagccgccactc
actgacctgggcgtcctgtacgagtggaaggagcgtctgatgcagggctgccagctcatc
cagaccacgccctccggacggccggccaacatcagcggaaactcgtcccagcgcatctac
gtcacctaccgccgggcgcccgagagccagccccactccgccctggccgtcaccgacatc
tgcatcatcatcccgagcaaaggggagacgccgccgcacaccttctgcaaggtggagaag
aatctcaacagcagcatgtggggctcctcggtctacttgtgttacaagaagtctgtggcc
aaaaccaacatgatagcctacaaagcaggtttattcagcagatatccagaggaggactac
gagtctttccctctgccggagtcggtccctctcttctgccttcccatgggggccaccatc
gagtgctggcccgccaccaccaaatactccctgcctgtgttctccaccttcgtcctcacc
ggagcctccggagaaaaggtctacggtgctgccattcagttctacgagcccttcccaccg
gagtgtctgactgaccagcagcgcgaccagctgggtctcctgagcccggatccacaaaaa
ccctcctccacctcatcctcctcttcctcatccttatcatcctcctcttcctccacccgt
acggggacgaccaccagcagctccaccaacacctccgccaccatcccacgctcggtccac
accaacaagtgcatctgtctgctctcccactggcccttctttgacgccttccgcaagttc
ctcacattcctgtatcgctactccatctccggccctcacaccctgcccatcgagaagcac
atttctcactttatgcataaagttccgttcccttcctctcagaggcctcgcatcctggtg
cagctttctcctcatgacagcctgatgctgagccagccggtgtcgtctcctctaccgctc
agtggtggtcgattctccacgctgctgcagaacctcggaccggagaacgccgtcaccttg
ctggtgtttgccgtcaccgagcacaagatcctggtccactcgttacgacccgccgtgctg
accagcgtcaccgaagcgctggtgtctatgatcttcccgttccactggccgtgtccgtac
atccctctgtgccccctggcgttggcggacgtattaagcgccccctgtccgttcattgtg
ggagtggactcccgctactttgacctttacgacccgccaccggacgtgagctgcgtggac
ctcgacaccaacaccatcttccacaatgacgataagcgagccctcacgtggaagatcctg
ccaaagaaagcctgtaaaaacctgatgaatgtgctgagtaatctctaccagcagctggtc
gacggtcagcagcgtcccgatgggcttctggagctcagcatgagttactcgtcggagctg
agctgtgggaaaagcctccacacgctggagctggagatccaggaggccttcctgcgcttc
atggcggccatcttgaaaggctaccgctccttcctccgccccatcacccaggcgccctcg
gagaaggccacagacgccagctcgctctttgacctgcaagggttcttgaagagccgcgac
cgctcccaccagaagttctactcgctgatgaccaaaacccagatgttcatccgcttcatt
gaggagtgctccttcgtcagcgacaaagacgccagcctggccttcttcgacgactgtgtg
gacaaactttacaattccgagaggagtgcagacaaaggaggaaaggtggacagcgagcgg
ccggaggagagccggctgatagagaccgatgagtctcagcgcagtgaacacaccgtcttc
atcacgccgccagagctgcctcctcttcccgagggggaggagtatccgctctgctacagg
tacgatggtttcccggtgttgagtctggacctgtttgaccccgttgagggcctgaggacc
ccgtcctccagactcgccgccaggcagagctgtcccaccagcccggcccccatgttcaga
cgcaccaagcaggagatcaagtcagcccagaagatcgccaagaagtactcgtcggtcccc
cagctgtggtccaagtgcctcctccgtcactgctacggcctgtggttcatctgtctgcca
gcgtacgtgaaggtttgccactcaaaggtccgggcgctccgcacggcgtacgacgtcctc
aggaagatgcaggcgaagaagctgcagccacctgacgaggtctgctaccgagtcctgatg
cagctgtgtggtcagtacggccaacccgtcctggcagtcagagtcctctttgagatgaag
aaggccggagttcatccaaacgccatcacctacggctactacaacaaggcggtgttggag
agcacgtggccgtccagcaccagaggaggatacttcctgtggatgaagctgaggaacgtg
gttctcggcgtggctcagttcaagcaggcgctacgacgacacgctccgtttacccagagt
cctctgtcagatggcagcgacgtggacagcctggagatctgtgccgacactaacctgggc
cccttcaacaccgagtccgcccgagtagaccccactgacgatagatctagcacaggggac
caatcagatttgggctataactcgctgtccaaagaggaggttcggagaggagaccccggt
gctccggacgccgccgccgcctccgacaaagacgacaagaaggagagcgactgcagctcc
ctgtcggagacggagagcaccaaggggagtaaagacttcctccctcagctggacgtggag
cttcactcctccttcaaacctcgtggcatcgtacgcagcagctgtccgtacgacgatcca
tcctgcaaacccaagagctccgtcagcgcaggccatgtagcaggtctgctcttcacctcc
tccctggatgagatcggtgaggtccacgcccacagtctgctcaggagacaccatagtgct
ctggaggaggtggtgggcagcgccggcagcggctcgagggcccggcggctgagcggggac
acggtgggcagcagcggaagcggcggcaccaccaccgtcctcggcctcggcatgagccag
ggagagaccgaccctgataagatcgcaggacacctcggggcagatgtgaagatcctctcc
ggagccaacttcagtaagagtacgaggcctcgctctctggctctgagcgggatggaccac
agggaggaggacgaggagggacaggactccagtgacgaggacagaaccaacacagaggcc
atttttgatctggaggatctggatttagacaaacccccgacggggaccagcatcaggtcc
aacaaacccaacagatctcgtaagaagcctgtggagcgcagcgtcagctacggcggcgtg
agcgcccccaagcgcacggacatccaggcgggctacgacccgctgtccctgctggcggcc
gagtctcagacggaccggccggatgaggaccggtacccggaggaggacgaggccggcacg
ccgagcgcccgcaggcacctggcccgggagatcgagctctacatgaaccacatgggcagc
ccgctgagcagccgcacgcccagtctggacctgcaggacctgaccagcccgctcctcctc
cacccgtcctcgctctcgngcccccgtagagccagcctcccccacggctcccccntcagg
gccgccggggtgacacgctcccgcaccttccacccgccctcgccctcccggcccgtctca
cgccagcgtctgctgtcgtcgccgtccatccgcagctccagcaccacgcccagcgccagc
cctcggcccagcccctgcagggaccgggcggaccgggggagtctggcctcaccctcctcc
tcctccttcgctctggacacgctgatcacaccgacactggacgtgttcaaaaccagcatg
gtgtctgctgggaagggcgtggcagagaaggcgagccgctggtactcccgtctcgccaca
tacaccacgcccaccaaggacggccacagcgaccgtctcagcgtctcctccctcggcatc
ggagatccagactgctcctccctgctggacgaggaggactgcggggagtctgaagggtct
gtgatctcccctcagaggaacggccccgctgggccccgcaggagccccagacggagcccc
ctacgcagcagactggacagcccctctgcaggctccagcatcgggagacccacatctctg
atccctggatgcgtcctctctcctcccggcttccctctgccggacaagtctgacctcggc
tcttcacgctacaccagcaacaccagcatcttcaacaactacgccatggagctgctgatc
tccagctgttctcgctgtaagacgtgcgactgtctggtgtacgacgaggagatcatggcc
ggctggacggcggacgactccaacctgaacaccacctgtccgttctgtgggaaccccttc
ctgcccttcctcaacgtggagatcagggacatgagaggacccggcaggcttttcctgaag
ggcagcccgtcggtggacgaggccatgacctcgtcgtactcggcctccaccggtctggac
acggggacgtccaccttgtccacgccgtgtccgaccacgtgtcccaccacggccgtgttc
cctccctcccctgtgatggctgaccaggagtgctctgggagtggaaggactcgtccgtcc
agagctcaggggatcagcatcccgtctccgacccccggaccgccgatggctcgcagcgtc
agcgccttcggtcctctggatgaagcgtctcttctcaaccgctgcgtgccgacgtcaggc
agcctgcccagccgtctgaacgagaccacggacccgctgaacatggagtggcgtctccac
aacccggagccggtgacggtgccctacctgagcccgctggtgctgtggaaggagctggag
agtctgctggagaacgagggcgacccggtgatcacggaggccgacgtggtggaccatcat
cccatcatctactggaacctggtctggtacttcagacggctggacctgcccagcaacctg
cccggtctcatgctcacctcggaccactgcaaccgggactcccaggtcccccgtcactgg
atgtcagaggacagtaaacacgtgttgatccagatcttgtgggacaacctgaagcttcac
caggactccgtccagccgctctacatcctctggaacactttcaatgtgggttaccctctg
tcccggctggtcccggaggaggagaagccgttcagtgaggatctgctgcagagcgtcgtg
aagagcatccagaggaacgacgtcggccggccgatggctcagctgctgcagctgctgggt
cagacgctcggggtcaaaaggcaaaggagtttgtacagagacgtcctcttcctctctctg
gtggctctgggaaaagacaacattgatatcgacgccttcgatcgagagtacaagttggcg
tacgaccgtctggtgccgagtctggtgaagctgacccacaactgtgaccgacctcccagc
accggggtcatggagtgccgcaggacgtttggagagccttacctgtaa
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