Anoplopoma fimbria (sablefish): 129109054
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Entry
129109054 CDS
T09102
Symbol
cnot10
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129109054 (cnot10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129109054 (cnot10)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129109054 (cnot10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_12
TPR_14
TPR_8
ANAPC3
TPR_7
ARM_TT21
TPR_MalT
TetR_C_5
Motif
Other DBs
NCBI-GeneID:
129109054
NCBI-ProteinID:
XP_054476955
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Position
20:10208695..10231188
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AA seq
746 aa
AA seq
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MLCNSSPAEQNEGKHDNSSSPGMTDQEKEMAASAYEAFSNAKYDESLKQLDALQELNKDD
YKIALNKAVVEFYKSSQTTTGTLKQTLMAMKNQVHTSAEDIDGLDDVENSLLYYNQAIIH
YHMRQYSEAIAIGERLYQFLEPFEKFAQAVCFLLVDLYLLTFQPEKALHLLAVLDKLSVQ
GSNKNGKGESNSSNKDGANQRAEFTAMIEAAKSKMHQYKVRAYIQMKSSKACKREIKSVM
NTAGNSAPSLFLKSNFEYLRGNYRKAVKLLNSSNIAEHPGPIKTGECVRCMFWNNLGCIH
FAMGKHNLGIFYFKKALQENDHTCAQLGDGSSGQSKKFTGIPMCALLANKRYELLYNCGI
QLLHIGRPLAAFECLMEAVQVYHSNPRLWLRLAECCISANKGGSEQESKGLPCKKGIVQS
IVGQGYHRKIVLASQSTQNTIYSEGQSAAIPVASMEFAAICLRNALLLLPEHQQQDTKTE
NGSKSSSQSGSTESGSENSDACSGKGQEADKFLSAAPSSPLRKQEVENLRCSILACSAYV
ALALGDNLMALNHAEKLLHQTKVSGSLKFLGHLYAAEALISLDRISDAIAHLNPENVSDV
SMGVLTSEQDQGSDKGDEPVESSGKQTPLCYPSSVTAARAMMLFNLGSAYCLRSEYEKAR
KCLHQAASMVNTKEIPPEAILLGVYLELQNGNTQLALQIIKRNQLLPTAVQRVSPESRKK
PVQTFQSVQSVQPIQLPSSFTQVQRK
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgctctgcaactcttctccagcagagcaaaacgaggggaagcacgacaactcatcatct
cctggaatgacggatcaagagaaagaaatggcagccagtgcttatgaagcgttttcgaat
gcgaagtacgacgagtccctgaaacagctggacgccctgcaggagctcaacaaagacgac
tacaagatcgccttgaacaaagctgtcgtggagttttacaagagcagtcaaaccaccaca
gggactctgaagcagaccctaatggcaatgaagaaccaggttcacacgtctgcagaggac
attgatgggttggacgatgttgaaaacagcttgctgtactacaatcaagccatcatccac
taccacatgaggcagtactctgaagccatcgccataggagagaggctctaccagtttctg
gaaccatttgaaaagttcgctcaggctgtgtgcttcctgctggtggatctgtacctgctc
accttccaaccagagaaggccctgcatctgctggccgtgctggacaaactctccgtacaa
ggaagcaacaagaacggcaaaggagagagcaacagttcaaacaaagacggagcaaaccag
agggcagagttcacagccatgattgaggcagccaagtcaaagatgcaccagtacaaagtg
agagcctacattcagatgaaatcctccaaggcctgtaagagggagatcaaatcggtgatg
aacacagcggggaactccgcgccctcgctcttcctcaagagtaattttgaatacctgaga
ggaaactaccggaaagcagtgaagctattgaacagctccaacattgcagagcatcctgga
cccatcaagacaggcgaatgcgttcgatgtatgttctggaacaatctgggctgcattcac
tttgcgatggggaaacacaacctaggcattttctactttaagaaggcgctgcaagagaac
gaccacacctgtgcacagctgggagacggcagcagtgggcaatctaagaagttcacaggc
atccccatgtgtgctcttctagccaacaagcgctacgagctgctgtataactgtggtatc
cagctgctgcacatcggcaggcctctggcagcgttcgagtgtctgatggaggccgtgcag
gtgtaccactccaaccccagactgtggctgcggctggcagagtgctgcatctctgctaac
aaaggggggtcggagcaggagagcaaagggttaccttgtaaaaaaggtatagttcagtcc
attgtcgggcagggctaccatcgcaagatcgtgctggcatcccagtctacccaaaacact
atctacagtgagggccagtcagcagcgatcccagtagccagtatggagtttgcagccatc
tgcctgaggaacgctttgctgctacttcctgaacaccagcagcaggacaccaagacagag
aacggctccaagagctccagtcagtcaggaagcaccgagagtggcagcgagaacagcgac
gcctgcagtggtaaaggtcaggaggctgataagttcctgtctgctgctccatcgtctccc
ctcagaaagcaggaagtagaaaacctcaggtgctccatcctggcctgtagtgcgtacgtg
gcgttggcgctgggagacaacctgatggctctaaaccacgctgagaaactgctccatcaa
accaaggtgtccggatccctcaagttcctgggtcacctctatgctgctgaagccctcatc
tcattggacaggatctctgacgccatcgcccacctcaacccggagaacgtcagcgacgtg
tcaatgggagtgctgaccagcgagcaagaccaagggtctgacaaaggagacgagcctgtg
gagtcctcagggaagcagactcccctgtgttaccccagcagtgtgacagcagctcgggcc
atgatgctcttcaacctgggcagcgcctactgtctgaggagcgagtacgagaaggcccgc
aagtgcctgcatcaggctgcatcaatggtgaacaccaaggagatcccacctgaagccatc
ctgctgggagtctacttagagctacagaacggcaacacccagctggccctgcagatcatc
aaacggaaccagctgctgcccacggcggtgcagagggtctctccagagtctcgcaagaaa
cccgtccagaccttccagtcagtccagtccgtccagcccatccagctgccctcttccttc
acacaagttcagcgcaaatga
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