Anoplopoma fimbria (sablefish): 129109143
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Entry
129109143 CDS
T09102
Symbol
dhx16
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129109143 (dhx16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129109143 (dhx16)
Enzymes [BR:
afb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129109143 (dhx16)
Spliceosome [BR:
afb03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
129109143 (dhx16)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
AAA_30
nSTAND3
Cas3-like_C_2
Flavi_DEAD
PWI
Motif
Other DBs
NCBI-GeneID:
129109143
NCBI-ProteinID:
XP_054477107
LinkDB
All DBs
Position
20:22154625..22170845
Genome browser
AA seq
1053 aa
AA seq
DB search
MANLEQWVNDRLHDILGLSDRYVSQFMIGLARKSSSSQDFVTRLEETGTIDIEPSVVSFA
QELFDKIPRKQVVEKPARALEREAIEMDKKNRTYTLLEDSESDGEVVREKEKGKKKNKEK
DKGNRRKHIRKKKESESSSEEEAPKRGNTGLGNQDSPKKEEEEEEWEKEERERQQDIEER
DAFAERVKLKDKDKTRNITERTDKKAYEEAQKRLKMAEDDQKNMLPELRKRSRWDYLKKR
EAEKLEDLEAEINDDEYLFHTEELTEREKKELEYKRTLRDLAKDYKKAGAREQEERKNRY
YMPEEKRSKDVPQRDLELEETPMELGGEQGRWEEERLKTASLSFGAKREREQGMRQEQER
YQLILEEDEMIDFVSTAMTMKGTRTDEEQEALALSQAELKKQSMQEVRRSLPIFPYREDL
LAAISEHQILVIEGETGSGKTTQIPQYLLESGYTNGGMKIGCTQPRRVAAMSVASRVSQE
MSVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTLH
TDILFGLIKDIARFRSDLKVLVASATLDTERFSRFFDDAPVFRIPGRRFPVDIFYTKAPE
ADYLEACVVSVLQIHVTQPTGDVLVFLTGQEEIETCCELLQERCRRLGSKIAELLVLPIY
ANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGMES
LIVTPCSRASANQRAGRAGRVAAGKCFRLYTAWAFKHEMEESTVPEIQRTNLGNVVLLLK
SLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMV
LASEQYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLVLLNVYTQW
LESGYSTQWCYENFIQFRSMRRARDVRDQLEGLMDRIEVEVVSSQGDSLPIRKAVTAGYF
YHTARLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIDSGWL
LEVAPHYYKSKELEDSSSKKMPRKQGKAKEELG
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctagagcagtgggtgaatgaccgtctccatgacatcctcgggttgagtgac
agatatgtgtctcaattcatgatcggccttgcgcggaaatcatcgagttctcaagacttt
gtgactcgtctcgaggagacgggcacgattgacatcgaaccgagtgtggttagctttgcc
caagagctctttgacaagattcctcgcaagcaggttgttgagaaaccagcgcgggccctg
gaacgggaagccattgaaatggacaagaagaatcggacgtacactttgctggaggacagc
gaaagtgatggagaagttgtgagggaaaaggagaaagggaagaagaaaaacaaggagaaa
gacaaagggaacaggaggaagcacatcagaaagaagaaagagagcgagtcgtcaagtgag
gaagaagcacctaaacggggcaatacaggcctagggaaccaagattctcccaagaaagaa
gaggaagaggaagagtgggagaaggaggagagagagcgacagcaggacattgaagagaga
gatgcgtttgctgagcgagtgaagctgaaagacaaagacaagacccgtaacataacggag
aggacagacaaaaaggcttatgaggaagctcagaagaggctgaagatggctgaagacgat
cagaagaacatgttgccagagttgaggaagcgctctcgctgggattatctaaagaagaga
gaggcagagaagctggaggacctggaggcggagatcaacgacgatgagtaccttttccat
acagaggagctgacggagagggagaaaaaggagctggaatacaaacgcacccttcgggac
ctggcgaaagattacaaaaaggccggtgcaagggaacaggaggagaggaagaacagatac
tacatgccagaagagaagagaagcaaggacgtgcctcagagggacctggagctggaggaa
acccccatggagctgggaggagagcaaggccgctgggaggaggagaggctgaagacggcc
tccctcagcttcggcgccaagagggagcgagagcaagggatgaggcaggagcaggagagg
taccagctgatcctggaggaggacgagatgatcgactttgtcagcactgccatgaccatg
aagggaactcggacggacgaggaacaagaggccctggctctgtcccaggcggagctgaag
aaacagtccatgcaggaggtccgacgcagcctgcccatcttcccctacagagaagacctg
ctagctgccatcagcgagcaccagatcctggtcattgagggggagacgggctccggaaag
accacccagatcccccagtacctcctggaaagtggctacacaaatggaggcatgaagatc
ggatgtacacagcctcgcagagtggcggccatgtcagtggcatccagagtgtctcaggaa
atgagcgtcaagctcgggaatgaggtgggttacagtattcgttttgaggactgcacatca
gagagaacagtgctcaagtacatgacggacggcatgctgctccgagagtttctcaccgag
cccgacctggccagctacagtgtgatcatcatagatgaagctcatgagagaacgctccac
acagacatcctgtttggtctgattaaggacatcgccaggttcaggtccgacctgaaggtg
ctggtggccagcgccactctggacaccgagcgcttctcccgcttctttgacgacgcgccc
gtcttcaggatccctggcaggaggttccccgtcgatatcttctacactaaagctccagag
gctgattacctggaagcttgcgtggtgtcggtgctgcagatccacgtcacccaacctact
ggagacgtactggtcttcctcactggacaggaggagatcgaaacgtgttgcgagctgctc
caggagagatgccggcggctcggatctaagatcgcagagctgctggtccttcccatctac
gccaacctgccgtccgacatgcaggcgaagatcttcaaccctactccgccgggagcccgt
aaggtggtggtggctaccaacatagcagaaacctcgctgaccatagatggcatcatctac
gtcattgacccaggcttctgcaaacaaaagagctacaacgcccgcaccggcatggagtca
ctcatcgtcacaccctgctcacgggcttcggccaaccagagggcgggccgtgcaggcaga
gtggctgctgggaaatgtttcaggctttacacagcatgggcctttaaacatgagatggag
gaatcgacggtgcccgagattcagaggaccaacttgggaaatgtagtcctgctgctgaag
agtttaggcatcaatgacctcattcactttgacttcatggaccctcctcctcatgagact
ctggtcttagccctggagcagctctacgctctgggagcactcaaccacctgggagagctc
accaagctgggtcgcaggatggctgagctcccggtggaccccatgctgagcaagatggtc
ctggcctccgagcagtacaagtgttcagaggaagtgttgacgatagccgccatgctgtca
gtaaacaactctattttctaccggcccaaagacaaagtggtgcacgccgacaacgccagg
atgaactttgtggtgccggggggagaccacctggtgctgctcaacgtctacacacagtgg
ttggagagcggttactccacgcagtggtgctacgagaacttcatccagttccgctccatg
agaagagcccgggacgtcagggaccagctggagggtctgatggaccgcattgaggtggag
gtggtgagctcccagggggacagcttgcccattcgcaaggcggtgacggcgggatacttc
tatcacacggcgcgactgagcaaaggcggctacaagacggtgaagcaccagcagacggtc
tacgtccaccccaacagctctctgttcgaggagcagccgcgctggctcatctaccacgag
ctggtcttcaccaccaaggagttcatgagacaggtgattgagatagacagcggctggctg
cttgaagtggctcctcactactacaagagcaaagagctggaggacagcagcagcaagaag
atgccccgcaagcagggaaaagcaaaagaggagctgggataa
DBGET
integrated database retrieval system
