Anoplopoma fimbria (sablefish): 129109415
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Entry
129109415 CDS
T09102
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04518
Integrin signaling
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129109415
04518 Integrin signaling
129109415
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129109415
09142 Cell motility
04820 Cytoskeleton in muscle cells
129109415
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129109415
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129109415
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129109415
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129109415
Hyaluronan
Extracellular matrix or blood plasma proteins
129109415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
VWA_CoxE
PRIMA1
Motif
Other DBs
NCBI-GeneID:
129109415
NCBI-ProteinID:
XP_054477457
LinkDB
All DBs
Position
20:28422511..28461994
Genome browser
AA seq
2494 aa
AA seq
DB search
MKARVSLLLGLIVAACSSGSAAQIPECENASLADIVFLVNGSGSIYEDNLKEVRTFLSSI
IEALEIGPDKVRIGFAQYSDEISPSFLLKDHMDKKSLLKAVEDLPSTKTQAKDFLHYFNK
DTGSRASQQVPQIAVFITEGESIDYLKTTAQHLRNQEVIVFGIGVGAANRTELESIANRP
PERFLSSIDNYQALQSLTRGLLQTVCISVEDQRQALAERFGDIFFLVDSGIATANVSRFR
TEFLNLIDQLNVGASTYRIGLAQYGQDTSVEFSFNTSQSKADIKAAVKRFRLRPRPKQPR
NLGSALTYANTXLFTPEAGGRAHQGTPQYLVVVSGRASNDSVSRPAQKIKSSGVTVFGMS
AGASMDDISLFVDSRYAFKTPEVLILKDFFLTPKKEVVTEECKGANLADIVFIVDESESI
GRDNFQLVRTFLHSLVSGLDVSPSRVRVGIVTYNEKPTAQVYLNTFNDKDETLQFIKILP
YRGGGTYTGKALNYTLKEIFTEEKGSRSKNSGKGFQQVAVVITDGESKDQVSNAATNLRR
AGVTIYAVGIKNASVTELKKMANHPPDRHVFNVNSFTDLKPLKQSLQRILCQNLIEKAKD
KSNDQACVQKDEADIFFLMDDSGSIEHKDFDKMKNFIIRFLKTFRIGKEYVRLGIVKYAD
WPTRQFDLTAHSDAKSLENAVLGIKHDGGGTETGKALEFMVSHFERAKVTRGHKVPEYLV
VITDGKSTDEVKAPAEKLRAQGVTVYAIGVENSTQSQLEEIAGDRKRTFFVTNFDALDAI
HNEIITEFCSEDVCKDVQGDIFFLTESSQSISTEDFGKMKDFMKSVISKTPIGQDEVHVG
VMQFSTKPKLEFSLNSHNRKDILSAIDGMKQMNEGTLTGEALKEVTQYFDATRGGRPGIR
QRLIVITVRESKDQVKGLAAALRAKGVVVYAIGVAEANTTQLVEISGSLDRVYSKEDFDG
LKDLESQVALKICEKDCQIGKADIIFLVDTSISINSTQYDSMRTFMESVVNQTTVGKDHT
RFGIISYSNDPETHLTLDDSDSKRKVLTAIPVVKPKEGNTYTGKALNYSLQFFNAEYGGR
RALKVPQILMVITDGAATEPYKLKEPSDALRNNGVIVVSIGVKEAPEAQLNTMAGGDTSK
VFFVDEFKGLETLYRNMSSVFCIKPACEKADLVFLLDRSGSIKQPEYTIMKNFTADVVSS
FNVSEEFVRVGLAQFSENPRDEFYLNRFFKMEDCVSHIKGMQYEGGNTNIGKALEHIKDY
FDESRGSRSENPKNLVLISDGDSQDDVRVAARSLKKLGINVFAVAVGNVHLLQLLQITGT
PEKLFTVHDFKDLPNIKKDLVDTICQKDEPPVLPPTXPPHPPPPPGDCSIDIAMGFDISQ
KDRVPGEMLISGHDKLRAFLPDIVRYVSSVQGLCCVGPEPVKTNMAFQVLGREGQSLYDT
NFEAYNSDTVDKVMRLQISEPTYFNTALLKSFKERFKVKSKARVKVLVIFSDGLDEDVMK
LEQESELLRQSGVHALLTVALDGARDPAQLQMVEFGRGFGYKLPLSIGMPSVGSTVLQQI
DAVSDKECCNIMCKCSGLEGVRGYRGPPGSKGPSGQKGQPGFPGEEGVSGERGLPGLIGP
QGLEGCPGPRGQKGSWGVSGNRGEDGEDGLDGVNGEQGLTGPDGARGERGEPGDPGISGI
RGEEGLKGQRGLRGDPGEPGADNTSPGAKGDPGNPGLQGLPGTDGXAGEDGDTGNPGADG
RRGSLGDKGVSGNKGGPGLQGSPGASGPQGSRGKKGGPGPGGLSGFPGTQGGPGPAGDPG
LAGRRGSNGQKGQPGEPGVKGAAGTPGPRGMPGQDGKDGYGPPGPKGSKGDPGFPGYPGL
QGESGQMGTKGYPGRKGNQGRGGNSGGPGASGGPGDPGHPGHKGPRGLPGGRGMTECQLI
SYIRDNCVCYQGESECPAYPTELVLGLDMSEDVTPAAFERQRSVLLSLLEDIAVSESNCP
TGARVAVVGYSAYTKYLIRFQDYHRKTQLIESVKNIALERTSNRRQLGAAMRFVGQNVFK
RVRAGMLMRKVAVFLSNGPSPDVSDIATAVMEYRALGIVPAVISLRNAPAVGRAMEVDDS
GSSIFTVLGRDMAADLKKVKSCAVCYDPCQRSERCSFIQEPVKPQEVDMDLVMVADSSRE
IQADEFAGIQQLLGSVVEQLAVSPQPGRPGNQARVALVHQSSAQATKVDFDLGSYQTSSM
MKNHLIQNFKQQGGSLSLGRTLEFTLQEVLLKAVQPRRRRVLLTVVGTQTAHEDRAKLRY
ISQKAKCEGVAVFVVTVGDRYDRTQVEELASPPLQQHLIHMGRLRADEQGYAQRFFRVFL
SALNKGLNKYPPPLLKQTCNQLTDQEFYPQDGQEIREQRDEETGGQTQSGQMDVTDTLTG
GDGLNDVCLLPKDSGGCSNFTLMWFFNSHEGKCSRFWYGGCGGNDNRFATHNDCERLCPT
TRGGGGGGGGGGGGGGGGRGIAGRRRRLKIDAFH
NT seq
7485 nt
NT seq
+upstream
nt +downstream
nt
atgaaggccagagtgagtcttctgctcggcctcatcgtagcagcgtgttcctctggatcc
gctgctcagataccagagtgtgaaaacgccagcctggccgacatcgtcttcctagtcaat
ggctctggcagcatttacgaagataaccttaaggaggtccggacttttctcagcagcatc
atcgaagccctcgaaatcggccctgacaaagtccggatcggcttcgctcagtacagcgac
gaaatatccccgtcgtttctgctaaaggatcacatggacaaaaagtccctgctgaaggca
gtggaagatcttccctccacaaaaacccaagccaaggacttcctccactatttcaacaag
gacacagggagccgagccagccagcaggttcctcagatcgctgtgttcatcacagaagga
gaatccatagattatctgaaaacgactgcccagcacctgaggaatcaggaagttatagtg
tttggcattggggtgggagcagccaaccgcacagagctggagtccatcgccaaccggcct
ccagagcgcttcctgtcctccatcgataactaccaggctctgcagagtctgaccagaggt
ctgctgcaaactgtttgcatctctgtggaggatcagaggcaagctttggcggagaggttt
ggagatattttcttcctggtggacagtggcatagctacggcaaatgtctccaggtttagg
actgaatttctcaacttgatcgatcaacttaacgttggagcgtccacctaccgcatcggt
ttggcccagtatggtcaagataccagtgttgaatttagtttcaatacttctcaatctaaa
gcggacatcaaggctgctgtcaaacggttccgcctgcgcccacgacccaaacaaccacga
aacctgggcagtgctctgacgtacgccaacacgncactttttacccctgaggctgggggc
cgtgcacaccaaggaaccccccagtacctggtggtcgtcagtggaagagcgtccaatgat
tctgtgtccaggcccgctcaaaagatcaaatcatcaggggtgactgtctttgggatgagt
gcgggtgcaagcatggatgatataagcttgtttgttgattctcggtacgcattcaaaact
cctgaagtacttattttgaaggatttcttcttgaccccgaaaaaggaggtcgttactgaa
gaatgcaaaggagccaatttggccgacatcgtgttcatcgttgacgagtctgaaagcatt
gggagagacaacttccagctggtgcgcactttcctccactcgcttgtgagcggcctggat
gtcagtccctctagagtccgagtgggcatcgttacgtacaacgaaaagcccacagcacag
gtctacctcaacaccttcaatgacaaggatgaaaccctccagttcatcaagatcctgcct
taccgtggaggcggtacgtacacaggaaaagctttaaactacaccctgaaagaaatcttc
accgaggaaaagggcagcaggagtaaaaacagcggaaagggtttccagcaggtggcagtg
gtgatcacagatggtgaatccaaggaccaagtgagcaacgcagcaaccaatctccgtcgg
gctggggtcaccatttacgctgttggaatcaaaaatgctagcgtgactgaactgaagaag
atggccaatcacccccccgataggcatgtttttaatgtgaacagtttcacagacctgaag
cccctgaagcagagcctgcagaggatcctgtgtcaaaacctcattgagaaagcaaaggac
aagagcaacgatcaagcatgtgtgcaaaaagacgaagcagacatcttcttcctgatggac
gactcagggagcattgagcacaaagactttgacaaaatgaagaacttcatcatcaggttt
ctaaaaaccttccgtattgggaaagaatatgtccgcctggggattgtgaaatatgcagat
tggccaacgagacaatttgatctgaccgctcactcagatgccaagtcactggagaacgcc
gtcttgggtattaaacacgatggaggtgggacagaaacaggaaaagcgctggaattcatg
gtctcacactttgagagagccaaggtcactcgtggtcacaaagtcccagagtacctggtg
gtcatcacagatggaaaatccactgatgaggtcaaggctcccgctgaaaaactgagggct
cagggtgtcaccgtctacgccatcggggtggaaaattcaactcaatctcagctggaagag
atagccggggaccgcaagaggaccttctttgtcactaattttgatgccttggatgccatc
cacaacgagatcatcacagagttctgttctgaggacgtttgcaaagatgtacagggcgac
atctttttcttaactgaaagctctcagagcatctctacggaagactttgggaaaatgaaa
gatttcatgaaatctgtcatcagcaagacccccattgggcaggacgaggtgcacgtcggt
gtcatgcagttcagcacgaaacccaaactggagttttccctcaacagtcacaacagaaaa
gacattttgtcagccatcgatggtatgaagcagatgaatgaaggcacgctcacaggagag
gccctcaaagaggtgacgcagtactttgatgcaaccagaggagggcgtcctggtattagg
cagaggctgatagtgataacagtgagggagtccaaagaccaggtcaagggcctcgccgcg
gctctgagggccaaaggagtggtggtctacgccatcggagtggcggaagccaacaccacc
cagctggtagagatcagcggatcattggacagggtgtatagtaaggaggactttgatggt
ctgaaggacttggaaagccaggtggccttgaagatctgtgagaaagattgtcagatagga
aaagctgacatcattttcctggtggacacctccataagcataaattcaacacaatatgac
agtatgcggacgtttatggagtcagtagtgaaccaaaccacagttggcaaggaccacact
cgttttgggatcatctcctactcgaatgatcccgagactcatttaactctagatgactct
gactccaaacgaaaagttctgacagcaatcccagttgttaagccaaaagaaggaaacacc
tacacaggcaaggccttgaactactcgctacagttctttaacgctgaatacggcggccgg
agagcactcaaggtgcctcagatcctcatggtgatcacagacggggcagccaccgaacct
tacaaactgaaagagccatctgatgcactgagaaacaacggggtcatcgtcgtcagtatc
ggagtgaaagaagccccagaggctcagctgaataccatggctggtggagacacatccaaa
gttttcttcgtggacgaatttaagggactagaaactctgtacagaaatatgtcttctgtc
ttctgcattaagcccgcttgcgagaaggccgacctggtcttccttctcgatcggtctggc
agtatcaaacaacccgaatacacaatcatgaaaaacttcacggcagacgtggtgagcagc
ttcaacgtcagtgaagaatttgtgcgtgttggacttgcacagttcagcgaaaatcctcgg
gatgagttttacctcaacagatttttcaagatggaggattgtgtctcacacatcaaaggc
atgcaatacgaaggtggaaacaccaacatcggaaaggccttggaacacattaaggattac
tttgatgagtcgcggggcagccgcagtgagaaccccaagaacctggtgttgatctcagat
ggtgattctcaagatgacgtgagggtggcagctcgcagtctcaagaagctggggatcaat
gtgtttgccgttgccgtcggaaacgttcacctgctgcagctcctgcagatcaccggcacc
ccagagaagctgtttactgtgcatgacttcaaagacttgccaaatatcaagaaggatttg
gtggacaccatttgccaaaaagatgagcctccggttctgcccccaacanncccgccccac
cccccacccccaccaggtgactgcagcattgacatcgccatgggattcgatatttctcag
aaagacagggttccaggtgaaatgctgatcagcggccacgacaagctccgggccttcctg
ccagacatcgtccgttatgtttcttcggtacaaggtctgtgctgcgtcggtccagaacct
gtcaagaccaacatggcctttcaagtgctaggtagagagggacagagcttgtacgacaca
aacttcgaggcctacaacagtgacacagtggataaagtcatgagactgcagatatcagaa
cctacctacttcaacaccgccctgctgaagtccttcaaggagaggttcaaggtcaagtcc
aaagctagagtgaaggtgctggtgatcttctctgacggactcgatgaggacgtgatgaaa
ctggagcaggaatctgagctgcttcgacagtctggcgtccacgctctgctgacggtggcc
ctggatggggcccgagacccggcccagctgcagatggtggagtttggacgagggttcgga
tacaagcttcctctcagcatcggcatgccgagcgtcggcagcaccgtcctccaacagatt
gacgcggtgtcagacaaggagtgctgcaacatcatgtgcaaatgttcgggccttgaaggc
gtccgtggctatcggggccccccggggtcaaagggtccgtctggacagaagggtcagccg
ggcttccctggagaggagggcgtctctggggagcgagggcttcctggactcattggacct
cagggcttggagggctgtcctggacccagaggacagaagggctcctggggagtctccggt
aacaggggcgaggacggtgaagacggactggacggagtcaacggagagcagggactgacg
ggaccagacggagctcgaggagagagaggagaacctggagacccaggtatctcaggaatc
agaggggaggaggggcttaaaggacagcgaggactcagaggagatccgggtgaaccaggt
gctgataacaccagtccaggagccaaaggggaccctgggaacccaggtttacagggttta
cctggaaccgacgggnnggcaggagaggatggagacacggggaacccgggtgcagacggg
aggagaggatctctgggggacaagggggtatctggaaacaaggggggtccaggacttcag
ggcagcccaggtgcttctggtcctcagggaagcagagggaagaaggggggtcctggacca
ggaggactctctggctttcctggaactcagggaggaccaggaccagctggagacccggga
ttagctggacgtcgtggatctaacggacagaagggccaaccaggagagcccggtgtgaag
ggggctgccggaacaccgggacccagaggaatgccgggccaggacggaaaagacggctac
ggacctccaggacccaaaggatccaagggggatcctggtttccctggttaccctggtcta
cagggtgagagcggtcagatgggaaccaaaggatacccaggacgtaaagggaaccaaggt
cgaggtgggaactccggcgggccgggagcctcaggcgggcctggagacccgggacatcca
ggacacaagggtcccagaggtctccctggaggcagaggcatgactgagtgtcagctgatc
agctacatcagagacaactgtgtgtgttaccaaggtgagtcagagtgcccggcctacccc
accgagctggtgttgggtctggacatgtcggaggacgtgaccccggcagcctttgagagg
cagcgctccgtcctcctgtccctgctggaggacatcgccgtctccgagagcaactgtccg
acgggcgctcgcgtggccgtggtgggttacagcgcctacaccaagtacctgatccgcttc
caggactaccaccgcaagactcagctgatcgagtccgtgaagaacatcgccctggagagg
acgtccaaccggcggcagctgggggccgccatgcgcttcgtgggtcagaacgtcttcaag
cgggtccgagcaggaatgctgatgaggaaggtggcggtcttcctctccaacggaccctcg
ccagatgttagcgacatcgccaccgcagtgatggagtaccgggccctcggcatcgtcccg
gcagtcatctctctgaggaacgctcctgctgttggtcgagccatggaggtcgacgactca
ggaagctccatcttcaccgttctggggagagacatggctgccgacctgaagaaggtcaag
agctgtgccgtctgttacgacccctgccagcgttcggagcggtgctccttcatccaggaa
ccggtgaagccccaggaagtagacatggacctggtcatggtagcggacagctccagggag
attcaggctgacgagttcgccggcatccagcagctgctgggctctgtggtggaacagctg
gccgtgagcccgcagcccggcaggcccggaaaccaggcccgggtggccttggtccaccag
agcagcgcccaggctaccaaggtagattttgacctcgggtcctaccagactagctccatg
atgaagaaccacctgatccagaacttcaaacagcagggcggctctttgtcgctgggacgg
acgctggagttcaccctgcaggaggtgctcctgaaggcagtccagccccggaggaggagg
gtgctgctgaccgtggtcggcacccagacggctcacgaggaccgagccaagctgcgctac
atctcccagaaggccaagtgtgaaggggtggcggtgttcgtggtgacggtcggagatcgt
tacgaccggacgcaggttgaggagctggccagtccgcctttgcagcagcacctgatccac
atgggccgtctgagggctgacgagcagggctacgcccagcgcttcttcagggtcttcctc
tccgccctcaacaagggattgaacaagtatcctcctcctttattgaaacagacctgtaac
cagctgacagaccaggaattctatcctcaggacggtcaggagatcagagagcagagagac
gaggagaccggaggacagactcagtccggacagatggacgtcactgacaccctgaccgga
ggagacggactcaacgacgtctgtctcctcccaaaggacagcggtggctgctccaacttc
accctgatgtggttctttaacagccacgaggggaaatgctctcgcttctggtacggcggc
tgtggcggcaacgacaaccgctttgcgacgcacaatgactgtgagagactctgtcctacg
acgagaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaggaagaggt
atcgcaggacgtcgccgtcggttgaagatagatgcttttcactaa
DBGET
integrated database retrieval system
