Anoplopoma fimbria (sablefish): 129109483
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Entry
129109483 CDS
T09102
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129109483 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129109483 (cnot3a)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129109483 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
129109483 (cnot3a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
129109483
NCBI-ProteinID:
XP_054477532
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All DBs
Position
20
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AA seq
909 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEELKRLIERHRFHI
LMLETILRMLDNDSVPVDAIQKIKDDVEYYIDSSQDPDFEENEFIYDDLDLEDIPLVATS
PSGQGNLEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSPVK
NGTPSLLSSFSSSTTSGSSSSSSLVSMASVVGGIPIVPTSNSLIGSFSSAVQQHQHQPAQ
QQQQPQPINQPQQQQQQQQSPQTKPSAPSNNTPSPPSNPLLPASTALSLPLPSTPSSSAP
NSQSQLTSVSTPTSSLGLGLGLGLSKIGLTGTSSANQMSGFGLGVHSSPLNTMAGLISGS
TPAPYAQAAASGGLGLSSTTQSSISVESSTSIPTSGSSGVTTNGAGVGLGLLGSSPAHSS
LSGSILGLVPGQNVAPGASQLPPSSVSTTPGVVGMMGGNGGNVSVVGGVGVNAAPARPPS
GLKQNGSTSYSAVVAESSTESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLPPS
SPSPSFSDSTPGGGSLLNGPHSYTQASEALKAPEPLSSLKAMAERAALGSGLDGEIPNLH
LTDRDIFSSSSAAPGTPAAPQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQESAWTH
MPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQ
YLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEY
RYLEDRDLQ
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaactacaaggtgagatcgatagatgtttgaaaaaagtagctgaa
ggtgtagaacagtttgaagacatctggcaaaagcttcacaatgcagccaatgcaaaccag
aaggaaaaatatgaggctgacctcaagaaagagattaaaaaactacagcgattgagagat
cagataaaaacatgggtggcctcaaacgagatcaaagacaaaaggcagctagtcgagaac
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgtgaaacaaaaaca
aaagcctactctaaagaaggcttggggctcgctcagaaagtggatccagctcagagggaa
aaagaggaaacgggacagtggctaacaaatacaatagatactctaaatatgcaggtggat
cagtttgaaagtgaggttgaatctctttcggttcagacgagaaagaagaagggcgataaa
gataagcaggatcgtattgaggagctcaagcggttgattgagaggcatcgattccacatt
ctcatgttggagactattttacgaatgctggataatgactcagtaccagtggatgcaatc
cagaagatcaaagatgatgttgaatactacattgattcctcccaagacccagactttgaa
gagaacgagttcatatatgacgacttagacctggaagacataccattagttgcaacttct
ccatcaggtcaaggcaatttggaggatgagatgtatctccactccagcagcactcctact
tccacaacctcctcttcacctattcctccatccccggccacttgcactgctgagaactca
gaggacgataagaaaagaggacgatcgacagacagtgaagttagtcagtcacctgtaaag
aacggcaccccatccttgctatcgtcattctcttcctccaccacctctggctcctcgtca
tcctcctcccttgtgtccatggcgagtgttgtcggaggcattcccattgttcccacaagc
aacagtcttatagggagcttcagcagtgcggtgcagcaacatcagcatcaacctgcacaa
cagcagcaacaacctcagccaatcaaccaaccgcagcagcaacaacaacagcagcagtca
cctcagacaaaaccctctgccccctcaaacaacacccccagcccgcccagcaaccctctt
ctcccagcctcaactgcactgtctctccccctgcccagcacaccaagttcatcagctccc
aactctcagtctcagctcacatctgtctccacgcccacatccagtttgggactcgggctg
gggcttggattgagcaaaattggcctgacggggaccagcagtgccaaccagatgtctggt
tttggcctgggtgtccactcgtcgcctttaaacacaatggcagggctcatttcaggctcc
acacctgccccatacgctcaggcagcagcatcaggaggcttgggtttaagcagcaccacc
cagtccagcatttcagtagagagcagcacttccatacccacctctggctccagtggagtc
accaccaacggggcgggggtagggctcggtcttctgggttccagcccggcccacagctct
ttgagtgggagtattctgggtctggttcctgggcaaaatgtagccccaggtgcctctcag
ttacccccaagttctgtcagcactacccctggagtagtaggcatgatgggaggcaatgga
gggaatgtcagcgtggttggaggagtaggagtgaatgctgctcctgctagaccaccgagt
ggactgaagcaaaatggaagcacaagttacagtgctgtagtggcggagagctccacagaa
tcagctctaagcacaccgagccagtcacaaagcagccaaccctcatccctcagttcttca
accagtcagccgatggacaatggtcccagtttaatcagctccatcaccctgcctcccagc
tctccgtccccctcgttctcagacagcacacctggaggaggtagtcttctcaacgggccc
cactcctacacacaggcctccgaggctctcaaggcccctgaacctctcagttctctgaag
gcgatggctgagagagcagcgctgggatcaggcctggatggagagattcccaacctgcac
ctaacagacagagatatcttctctagttcatctgcagcgcccggcacacctgccgcccct
cagccgtccgtgtcggaggtcagcatccccccctcgctcggggtctgtccacttggcccc
acccctctccccaaagaccagctctaccagcaggccatgcaggaatcagcatggacacat
atgccacacccctctgactctgagagaatcaggcaatacctgatgaggaatccgtgtccc
accttgcctttccaccatcaaataccaccgcaccactctgactctatagagttctaccag
aggctgtccacagaaaccctctttttcatcttctactacctggagggcaccaaggctcag
tatttgtctgccaaggctctgaagaaacagtcatggaggttccacaccaagtacatgatg
tggttccagaggcacgaggagccaaagactataactgacgaatttgaacagggcacttac
atttactttgactatgagaaatggggccagaggaagaaggaggggttcacctttgagtac
aggtacctcgaagacagagatctgcagtga
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