KEGG   Anoplopoma fimbria (sablefish): 129109490
Entry
129109490         CDS       T09102                                 
Symbol
mdc1
Name
(RefSeq) LOW QUALITY PROTEIN: mediator of DNA damage checkpoint protein 1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
afb  Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:afb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afb03400]
    129109490 (mdc1)
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    129109490 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT
Other DBs
NCBI-GeneID: 129109490
NCBI-ProteinID: XP_054477540
LinkDB
Position
20
AA seq 2199 aa
MDATQMISDSILEDEEEDKEENENKRGRPLAKLCILKNEHIPENELPLFLGDNVLGRDPN
TCTLPLPAPSISKQHATICISVYKRRGRYSGVDIEALIWDLGSMNGTRKGHLKLTPNVRY
ALSEQDTLVVADIPCQYVSCTTDTVSSQEDMMTPVSRNSGVNARLPDPSGEKGGDPSTGI
KKCVNGGSKARVSLPNQEDTGKTPVRTSCLSFEKTPTQPEGTLVPESDSDSDTERGDRRR
KALVTDSDSHKSGPTCSTFLSPTNKIVPESEDESPITPCSSTKNRPYRHVSFSKEEPDVE
VVQQQLKNKKTLEIVDDSEEEEERAALGGGKSEESGQHVSGKQESNVSPTGEDDLPVSSP
AVCTDAIPAFDMDSDTDMEGEEERGASAFPVNLNTNQQADQPPNTAQFQMDSDTDVDEDA
LHEVPKSVPSSADHTKLTQPEGITMDSDTDVDDDDAVSDAAIKAKPTPLQSTHAADSSLS
TQQNDLHLDSDTDVDEEEEEKQSGTNNACPKIDETPTRLDIKPTGTESAPAASHSLHLDS
DTDDEAIPLPAIGDLSVVSAVTESVTTADAGADLGVLSDSDTDVDDDSPLVIPVNVSTLS
LDPGTSTDSNADTDVDESSVPPAGDGVNPADLRVDSDTDVEDLEVDFGEAGENQIPSLRR
ENTPGLLVPLQQNCSTPVQGSEGGLEEMETQGFLIPSSGPFIGARPIALSPCSASLEDDS
CFVAETQSFILQTRDCQGNPPEDPIQSSGVEKGKQSIRGGSFQLGLSDSSHLEGQAQALA
MENTQAFVPVAGGMNLEDTQAYADRTSSPNDLNRQADREDEEPARCSEISAKEGRVDFDL
EATQAYISEPYSDSEDETDEDERKKTASAETQPFDLPTSSTLAMAETLPFAFEEEERRKE
ECLDKENPISSVLEVKSSPQHVAEEREKHVEAAQPQKRHLSDALSVAETQPMHVSEDEES
DDEDLIPRKRKAKPLQLEDEQSQTLTNSELSLVETQPTHIGVAETQPIAASGSEESDDED
SITAPRKRKAKQLRLEDEQTQTLTNSELSTAATQPMETGEDGESDEEDFIPSPRKRRAKP
LQPEEESQPLAGPGGSVFETQPMGTCAEDKSDEEVSTPGPRKRNAKALQLEEEETQPLSI
SEVSAVETQPMVAGEDGESDDEESIQGPRKRRAKAKPIQEEDTQPLTSSEASIVETKTAL
QPRRGKGRETEAGTSGTSVGGRRLTRTRLREEEEEEEEQAECSEPPKRQTRGKMNALPTT
RGRRGKPRPDEEESEEEEEVEKAKRARGKRYTRQRKDSEEEEEMLETERNKHPENNNLLK
EQEEGRKEQDKLERERKEKEEQERVQAENAERLKLEQERAEKERIEREKSEEDEKKRADT
AQKEKEEHLERERKEKEEKERLERERAERKEKERLEKEREKEERERLGLEKAKREEERIE
KEREKEERVRLEHEKAEREEKERVEKERERFKRKKAEREEKEREAKERTEKERKDEEEEK
ERLKTAEREREEGLEKERKEQEHQARLERDAKEREEGERLETEKQAKEKQTKGQEENEPK
TSARGQRAARRTFAATEPQPDSTISASDDVPARRTRSRSNSSNSVSSERSASSVNTQGSR
GRGRGRGARRTSGPPEAAIARGSSSRRRSVAAESTQQDSYDSCPRGVLSRSNSTNSEISS
CSLSSQSRGRGGRQRGRGRKTESDSIPPMSSQSGQNLAPKPTARGRNSRRAEESSYEVPH
EDELEKADSQQAGTTRGRQQANANGSKPAAGDKKSTSSQECASEESPMSKRNVRGRSQKA
VKSETVETPVAPGVSDGEEPKEKRKGSKRQLEANAEEGSSSSSKISKGKEKAQTTEAEEG
EAKGETKDEIRVQATRKGRASSAQAKKNAKDSPAELEGKEESEETEEGTIVRRGRGRPSA
VHKLKKEKQEEGGTSVDQDPHVEASQPQTPTSSGSRKRQALADSSPVAKTPRSSSASPSA
GGQLRAVRQSYKVLFTGVVDEEGERVLARLGGSMAKGVADMNCLVTDKVRRTVKFLCAVA
KGVPIVTTHWLDKSGKAGSFLSPNAFVVKDPEQEKKFNFCLQESLKIASSQLLLQGYGIH
VTKSVKPEPVHMKDIISSSGATFLPKMPSSHKPQTVVIACEEDWPLCGPALSASLPVVTA
EFILTGILQQKLDLQKHKLSAPANTLLPAGGRGRSRKKT
NT seq 6600 nt   +upstreamnt  +downstreamnt
atggatgccactcaaatgatcagtgactcaatcttggaggatgaggaggaagataaagag
gagaatgaaaacaagaggggacgaccattggctaaactgtgcatcttaaaaaatgaacac
atccctgagaacgagttgcccctctttttgggtgataatgtgttgggccgtgaccccaac
acctgcaccctgcccttgccagcaccctcaatatccaagcagcatgccaccatctgcatc
tctgtatacaagaggagaggtcgttacagtggagtggacatagaggctttgatttgggac
ctaggtagcatgaatgggacccgcaagggccacttaaagctgactcctaatgtgcgctat
gccctcagcgaacaggacactttggtggtggcagacatcccgtgtcagtatgtcagctgc
actacagacacagtctcttctcaagaggatatgatgactcctgtgagcagaaattcaggg
gtaaatgccaggctgccagatccctcgggagaaaagggaggtgacccaagcacaggcatc
aagaaatgtgtcaatgggggttcaaaggctagggtgtcattacctaatcaggaggacaca
gggaagactcctgtcagaacaagttgcctgtcctttgagaaaactccaacccagccagag
gggaccctggtcccagaatctgactcggactcagacacagaaagaggagacagaaggcgc
aaggctctagtcaccgattctgactcccataaatcaggtcccacctgttcaacattcctg
agtcccacaaacaaaatcgtccctgaaagtgaggatgaaagtcccatcacaccgtgctcc
tccactaaaaataggccttacagacatgtcagcttcagtaaggaggagcctgatgtagag
gtggtgcaacagcagctaaagaacaaaaagacacttgaaattgtggacgacagtgaagag
gaggaagaaagagcagcgctgggaggaggaaagtctgaggaaagtggacaacatgtgtca
gggaaacaggaaagcaatgtcagtccaactggagaagatgacttgcccgtatcttcacca
gcagtctgcacagatgcgatccctgcatttgacatggacagtgacactgatatggaggga
gaggaggagaggggggcatctgcgttcccagtgaacttgaatacaaaccaacaagctgat
cagccaccaaacacagcccagtttcaaatggacagtgatacagatgtcgatgaggatgcc
ttacacgaagttcccaaatctgtgccttcctccgctgaccacactaaacttactcagcca
gaaggcatcactatggacagcgatacagatgtggatgatgatgatgctgtgtcagacgca
gctattaaagcaaaaccaacgccacttcaaagcacgcacgcagctgactcttcgctttct
acgcagcagaacgatttacacctggacagtgacacagatgttgatgaggaagaagaagaa
aagcaaagtggaacaaataatgcgtgccctaaaatagatgaaactcccactagattagat
atcaagccaactgggactgaatccgcccctgctgcgtctcacagcctgcatctagacagt
gacacagatgatgaagctattcctctccctgccatcggtgatctctcggtggtgtcagct
gtcacagagtccgtcaccactgcagatgcaggagctgatttgggtgttctgtccgacagt
gacacagatgtggatgacgattctcctctggtcatacctgttaatgtctcaacgttgtct
ctcgatcctggtacctcgacggattctaatgcagacacagatgttgatgaatccagcgtg
ccccctgctggggacggggtcaatccagccgacctcagagtggacagtgacacagatgtg
gaagatctggaggttgattttggagaggcaggtgagaatcagattcccagcctgcgcaga
gaaaacacccctgggttgctggttccccttcagcagaactgctctactcctgttcagggg
tcagaaggaggactggaggagatggagactcagggtttcctgattccctcatcaggtcca
tttataggtgccagacctatagcattatctccctgctcagccagcctggaggatgattcg
tgttttgtggctgagacccagtccttcattcttcagaccagagactgccaaggcaaccct
ccagaggaccccatccagtcatctggtgttgaaaaaggcaaacagtccattagaggaggg
tctttccagcttggattgtctgacagcagccacctggagggtcaggcccaagctctggcc
atggagaacacccaagcttttgtccctgtggccgggggtatgaatctggaagatacccaa
gcatatgcagacagaacttcctcaccgaatgatttaaatcggcaggccgacagagaggat
gaggaacctgccagatgttcagaaatatcggcaaaagaaggccgggtagattttgacctg
gaagcaacacaggcatatatttcagagccctacagtgattcagaggatgaaaccgatgaa
gatgagagaaaaaaaactgcttctgctgagactcagccttttgaccttcccacctcatct
actcttgccatggctgaaaccctaccatttgcctttgaggaggaggagaggaggaaggaa
gagtgtttggataaggaaaatcctatttcctccgtactagaagttaagtccagcccacag
catgtagcagaagagagagagaaacatgtggaggcagctcagcctcagaagaggcacctc
agtgatgctctttctgtggctgaaactcagcccatgcatgtaagtgaggatgaggaaagt
gatgatgaggacttgattccacgaaaaagaaaagcaaagccactgcagcttgaagatgag
cagtcacaaacgctcacaaactctgagttatcgcttgttgaaacccagccaacgcacatt
ggtgtggctgaaactcagcccatagctgcaagtggaagtgaggaaagcgatgatgaggac
tcaattacagctccgcgaaaaagaaaagcaaagcagctgcggctggaagacgagcagaca
caaacactcacaaactccgagctctctactgctgcaactcagccaatggagacaggtgaa
gatggagaaagtgatgaagaggacttcattccaagtccacgaaaaaggagagcaaaacca
ttgcaacctgaggaggagtcacagccgcttgctggtcctggaggttctgtttttgaaact
cagccgatgggtacatgtgcagaggacaaaagtgatgaggaggtctcaactccaggtcct
agaaaaagaaacgcaaaggcactgcaacttgaagaagaggagacacagcccctgtctatt
tctgaagtctctgctgttgaaacccagcccatggtcgcgggtgaagacggagaaagtgat
gatgaggagtcaattcaaggtccacggaaaagaagagcaaaggcaaagccaattcaagaa
gaggacacacaaccgctcacaagttctgaggcctccattgtagaaactaaaactgccctg
cagcctcggaggggaaaagggagagaaactgaagctggaaccagtggtacgtctgttgga
ggaagaagattgacaaggacaagattaagagaagaagaagaagaggaggaggagcaggcg
gagtgttctgaacctccaaagagacagacaagagggaagatgaacgctttgccaactact
agaggaaggagaggaaaaccaaggcctgatgaggaggagagtgaggaagaggaggaggta
gagaaggctaaacgagctagagggaaaagatatacgaggcaaaggaaagatagcgaggaa
gaggaggaaatgcttgaaacagaaagaaacaagcaccctgaaaataataacctattaaag
gaacaagaagaagggagaaaagaacaagacaaattagaaagggaaagaaaagagaaagaa
gagcaagaaagagtgcaggctgaaaatgcagaaaggttaaaacttgagcaagagagagca
gaaaaagagagaatagagagggagaaaagtgaagaggatgaaaagaaaagagctgacacg
gcacagaaggaaaaagaagaacatttggagagggaacgaaaggagaaggaagaaaaagaa
agattagagcgtgaaagggcagaaagaaaagagaaggagaggctagaaaaggaaagagag
aaggaagaaagagagcgattagggcttgaaaaggccaaaagagaagaggagagaatagaa
aaggaaagagagaaggaagaaagggtgagattagagcatgaaaaggcagaaagagaagag
aaggagagagtagaaaaggaaagggagagattcaagcgtaaaaaggcagaaagagaagag
aaggagagagaagcgaaagagagaacagaaaaggaaagaaaggatgaggaggaggaaaaa
gagagattaaagacagcagagagggaacgagaagagggacttgagaaggagaggaaggaa
caagaacaccaggcgagactggagagagatgcaaaggaaagggaggaaggagaaagattg
gagacagaaaaacaggccaaagaaaaacaaaccaaagggcaagaagaaaatgaacccaaa
acatccgcaagaggtcaaagagcggccagaagaacatttgctgcaacagagccgcagcca
gactccaccatatcagccagtgacgatgtcccagcaaggagaacccgatctcgctccaac
tcttccaactctgtcagctcagagaggtctgcttcaagtgtcaacacccaggggagcagg
gggaggggccgaggcagaggagcgaggaggaccagcgggccacccgaggcagccatcgcc
agaggcagcagcagtaggaggaggagtgtagctgcagagtcaacacaacaggacagttat
gatagttgtcctcggggagtcctttcaaggtcaaactccaccaactctgagatttccagc
tgcagcttgagctctcagagcagaggaagaggaggcaggcagcgaggaagagggaggaaa
acggagtcagactccatccctcctatgagtagtcagagtggccagaatttggctcccaaa
cctacagccagaggcaggaacagcaggagagcagaggaatcctcttatgaggttccccat
gaggatgaactagagaaggcagactctcagcaggctggtaccactagagggcgacaacaa
gccaatgcaaatggctctaaaccggctgctggagataagaaatccacttcaagtcaggag
tgtgccagtgaagaatcacctatgtctaaaaggaatgtcaggggcagaagccagaaagcg
gtaaagagtgagactgtagagacaccagtagctcctggagtcagtgatggagaggagcct
aaagagaaaagaaaaggaagcaaaagacagttggaggccaatgcggaagagggttccagc
agtagttccaaaatatccaaagggaaggagaaagcccaaacaacagaggcagaagaagga
gaagcaaaaggtgaaacaaaagatgagattcgagtccaagctacgagaaaaggtagagca
tccagcgctcaagctaagaagaacgcaaaagactcccccgctgaattggaggggaaagaa
gagagtgaggaaacggaggaggggacaattgtgaggagaggcagaggtcggccatcagcg
gtccacaaactgaagaaagagaagcaggaagaaggtggaacatctgttgaccaggatcca
catgtggaggcatcacagccccagactccaactagcagtggatcccggaagcgacaggct
cttgccgattcctcgcctgtggcaaagacccctcgctcctcctctgcttccccgtcagcc
ggcggtcaattaagagctgtcagacagagctacaaggtgctgttcacaggtgtggtggat
gaagaaggggagagagtgttggctcggttgggaggcagcatggctaaaggagtggcagac
atgaactgtctggtgactgataaggtgcgcaggacagtcaagttcctgtgtgcggtggct
aaaggagtccccatcgtcaccacacactggctggataagagtggtaaggctgggagcttc
ctgtctcctaatgcgtttgttgtgaaggatccagagcaggaaaagaagttcaatttctgc
ttgcaggagtctctgaagattgccagcagtcagctgctgttacagggctatgggatccat
gttacaaagtctgtgaaaccagagccagttcacatgaaagacataatctccagcagtgga
gctaccttcctacctaagatgccctcttctcacaagcctcagactgtcgtgattgcctgt
gaggaggactggccgctctgtggcccggctctctctgcatcgctcccagtcgtcacagct
gagttcattctgacagggatccttcagcagaaacttgaccttcagaaacacaaactctct
gcccctgcaaatactctactgcctgcaggaggcaggggaagaagcaggaagaagacttag

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