KEGG   Anoplopoma fimbria (sablefish): 129109601
Entry
129109601         CDS       T09102                                 
Symbol
xrcc1
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
afb  Anoplopoma fimbria (sablefish)
Pathway
afb03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:afb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    129109601 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:afb03400]
    129109601 (xrcc1)
DNA repair and recombination proteins [BR:afb03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     129109601 (xrcc1)
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 129109601
NCBI-ProteinID: XP_054477680
LinkDB
Position
20:21665727..21687830
AA seq 633 aa
MPEIQLKHVVSCSTEDTTHKADNLLSSDTYRKWKAARPGEKQTSVILQLEKEEQVHSIDI
GNEGSAFIEVLVGNSSAVRDQDYEVLLVTSSFMSPTESRNGTNMNRVRFFGPSQLQKSTA
QEKWDRVKIVCSQPYSKTIAYGLAFVKFHSPPDKNDPPPTSSPKLTKLGQFRVKDESPST
SPSLQPGSLFFSRDNATKSSTALKALSTSLSLVSPQSERLSYAAAALQAGGSSHSSGQAS
SSSSASPQPPAKRKFEFGKERPSASGPTPSKKTSPAGSPEVKAATPKHKPSPSSTPSPST
AKASPAQKSAEKKRESQSKPEPKPKQQKASAQQVPFKRIMEGVVFVLSGFQNPFRGELRE
KAVDMGAKYRPDWTPGATHLICAFANTPKYSQVKSAGGIIIRKEWVMDCHKRKQKLPYKR
YLMDGAESSSESEMEVDDQSEEEMNTKTPLKQERQVTPKKTPEKKGEDDEYAGSTDVEEP
GGGDDESAVDTEDELQRVESESRQKKAAAEGKTVKQEDPYGGSTDENTDVEAEEDHPIPE
LPDFLSGKHFFLYGKFPNNERRLLLRYIVAFNGLIEEYMTEKVQFVVTSEGWHDSFEDAL
MENGYLNFVKPAWIYAINERQKILPYQPYTVVP
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgccagagatccaactcaaacacgtcgtgtcctgcagcacagaggacactacccacaag
gcagacaacctgctgagctctgacacctacaggaagtggaaagcagcccgacccggggag
aagcagacctcagtcattctgcagttagaaaaggaggagcaggtgcacagcattgatatt
ggaaatgaagggtcggctttcatcgaggtgctggtgggtaattcttcagctgtcagagac
caggactatgaggttcttttggttacgtcttccttcatgtcccccacggagagccgtaac
ggcaccaacatgaaccgggtgcgtttcttcgggcccagccagctgcagaagagcacagca
caggaaaagtgggacagagtgaaaattgtgtgtagccagccgtacagcaagaccatagcg
tacggactggcctttgtgaagtttcattcaccgcctgacaaaaatgaccctcctccaaca
tcctccccgaaactgacaaaattgggacagttcagggtgaaggatgagtctccttcaacg
agtcccagccttcagcctggcagtctcttcttcagtcgggacaatgcaacaaagtccagc
actgcactcaaagcactcagcacgtctctgtctttagtgtctcctcagagtgagaggttg
agttacgccgctgctgccctgcaggctgggggcagctcccactcgtcaggccaggcttcc
tcctccagctctgcctcaccacagccaccagcaaagagaaaatttgagttcggcaaagag
cgtccgtctgcctcgggccctacaccctcaaagaagacgagcccggccggctcccctgag
gtcaaagctgcgacccccaaacacaagccgagcccatccagcacgccgagccccagcacc
gccaaagcttccccggcacagaagtctgctgaaaagaagcgggagagccaatccaaaccc
gaacctaaacccaaacaacagaaagccagcgcgcagcaggtcccattcaaacgcataatg
gagggggttgtgtttgtcctcagcggcttccaaaaccccttcagaggggagctgagggaa
aaggctgtggacatgggggctaaatatcgacccgactggacacccggcgccacacacctc
atctgtgccttcgctaacacccccaagtacagccaggtgaaatcagcagggggcatcatc
atacggaaggaatgggtaatggactgccataagaggaaacagaagctcccctacaaacgg
tatttgatggatggcgctgagtcgagctccgagagcgaaatggaagtagacgaccagagt
gaggaggaaatgaacacaaagactccactgaagcaggagagacaagtcacccccaaaaag
acgcccgagaagaagggtgaagacgatgagtacgccggctccactgatgtggaggaacca
ggaggcggtgatgatgagtctgccgtggacacggaggacgagctgcagagggtggagagt
gagagcagacagaagaaagcagcagcagaagggaagacggtgaaacaggaggatccatac
ggggggtcgacagatgaaaacacagacgtggaggctgaagaggatcaccccatcccggag
ctaccagacttcctgagtggaaagcactttttcctctacggtaaattccctaacaacgag
aggcgtctgctgttgcggtacatcgttgcctttaacgggctgattgaggagtacatgacg
gagaaggtgcagtttgtggtgaccagtgaagggtggcacgactccttcgaagacgcgctg
atggagaacggctatctgaacttcgtcaaaccagcatggatttacgcaatcaacgaacga
caaaagatactgccctatcaaccctacacggtcgtcccctga

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