Anoplopoma fimbria (sablefish): 129109640
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Entry
129109640 CDS
T09102
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129109640 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
afb03041
]
129109640 (u2af2a)
Spliceosome [BR:
afb03041
]
Complex A
U2 snRNP components
U2 related factors
129109640 (u2af2a)
Complex B
129109640 (u2af2a)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
129109640
NCBI-ProteinID:
XP_054477722
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Position
20:complement(17218434..17227366)
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AA seq
491 aa
AA seq
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MSDFDEFERQLSENKQAERDKENRHHRRSSSRSRSRERKRRSRDRDRRSRDRRGDSKDRR
HRRRSNPTGLAVPVNTTSSPPSIPQDNAGSRSPHREKKKNKVKKYWDVPPPGFEHITPMQ
YKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMM
DFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKI
RRPHDYQPLPGMSENPSVYVPGTQPINGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT
SFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSK
NATLTSINQTPVTLQVPGLNSSVTQMGGLPTEVLCLMNMVAPEELLDDEEYEEIVEDVRD
ECSKYGQVKSIEIPRPVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGRKFANRVVVTKYC
DPDAYHRRDFW
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaattcgaaagacagctctctgaaaacaaacaagctgaaagggac
aaagagaaccgccaccaccgtcggtcctcctcccgcagccggagcagagagaggaaaagg
aggagcagagacagggacagacgcagcagggaccgccgcggggacagtaaggaccgcaga
cacagacgcagatccaaccctactggccttgcagttcctgtaaataccactagctcacca
cccagcatcccccaggacaatgctggaagccgttctccacaccgtgagaagaagaagaac
aaggtgaagaagtactgggatgtccctccacctggttttgaacacatcactcccatgcag
tacaaagccatgcaagctgcaggccagatcccagccacagcccttctgccgaccatgact
ccagatggcctggctgttactcccaccccagtacctgtagtgggcagccagatgacccgg
caggcccgccgactctacgttggcaacataccctttggtatcacagaggagtccatgatg
gatttcttcaatgcccagatgcgtttgggtggtcttactcaggcccctggaaaccctgtc
cttgcagtacagatcaaccaggataagaattttgccttccttgagttccgttcagttgac
gaaacaacacaggcaatggcctttgatggtataatctttcaaggccagagcctcaagatt
cgtcgtccccacgattaccagcccctgcccggcatgagcgagaaccccagtgtctatgtg
cctggtacacagccaattaatggcgtggtgtctactgtggtgcccgactcggctcacaag
ctcttcattggcggcttgcccaactacctgaacgatgaccaggtgaaggagctcttgacg
tcatttgggcctctgaaggccttcaacctggtcaaggacagtgctactggcttatctaaa
ggatatgccttttgtgaatatgtcgatgtcaaccttaatgaccaggctattgctgggctg
aatggcatgcagctgggagacaagaaactcctggtgcagagagccagtgtgggatccaag
aacgccactctgacaagtataaatcagaccccagtgacgctgcaggtgccgggtctgaat
agctcggtgactcaaatgggtggcctgcccactgaggtgctgtgtctgatgaacatggtg
gcgccagaggagctgctggatgatgaggaatacgaggagattgtggaggatgtcagggac
gagtgcagcaagtacggccaagttaagagcattgagatacctcgacctgtggacggcctg
gaggtgcccgggactggcaagatctttgtggagttcatgtccgtttttgactcccagaag
gccatgcaggggctgacaggaaggaagttcgccaacagggtggtggtgaccaaatactgc
gatccagatgcttatcaccgccgggacttctggtag
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