Anoplopoma fimbria (sablefish): 129109942
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Entry
129109942 CDS
T09102
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04621
NOD-like receptor signaling pathway
afb05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
129109942 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
129109942 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
afb04054
]
129109942 (nod1)
Pattern recognition receptors [BR:
afb04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
129109942 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
NOD2_WH
LRR_6
LRR_4
AAA_16
NPHP3_N
AAA_22
RsgA_GTPase
ABC_tran
PIF1
MRM3-like_sub_bind
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
129109942
NCBI-ProteinID:
XP_054478065
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All DBs
Position
20:complement(9913861..9924314)
Genome browser
AA seq
939 aa
AA seq
DB search
MGRMEEAQASCLNILTYHRELLVSRLRSIQCILDNLLACGFVCEEDVEIVQRSATKTDQV
RKILELVQCKGEEACQYFIYIIYKVCDAYIDLQPWLKEINFTPSIDVTAMTVVNTDPISR
YCEKLRHEMSRDTSFIMSYGQREETRLEDLYTDTQMELLNDCNESLDFLESLDQLLGDHA
VFNPQGETIYVMGDAGVGKSILLQKLQNLWSKKELQTDAIFFFKFRCRMFSIFKDSDQIS
LRDLLFKYNCYPDHDPDDEVFDYILRFPEKVLFTFDGYDEIQMNDLTNVTEVVSPEVKAH
PLQLLISLLCGKLLKGSQKVLTARTGTEIQSRVIRKKVSLRGFSPAHLKTYIDLHFKEQE
HRDLVSVQLDASPHLCGLCSTPLFCWIVLKSFSHLHTMHDSFHLPETCITLTDIFLLLSE
VFLSRLGSPAPSLLKKRTRCVSETFKAGLRPLSAFAKLALQGMERGSFIYSQEEITECGL
SEEDLTLGFLRPVTEYDASGSPATFEVLHIILQSFLAAFALVLDEQAAAGSILKFFTECS
RKKESCLPFNFCICGSSQSNEKTPFETNEHLQFTNLFLCGLLSKANVGLMEHLVSPVLLK
KKRALLKSYLSTSVKSHLLGLPHFNGEEGKKVHVLPNFLWMLRCIFETGSKDIAQMTAKG
ITAGFIKLGYCNVFSGDCTALNFVLQHRRKHLGLDMDNNNISDYGVKQLRPSFSKMTIVR
FCVNHLSDSSIEVLAEELCKHKVVEVLGLYNNHITDVGAKLVAQIIEECPKLRIVKIGKN
KITSVGGRHLANAIQRSTSIFDVGMWGNSIGDEGAEAFAECLRHHPSLTNLSLSANGITS
KGGKYLAEALKENSVLRIFWLVQNELTDDATPYLADLVQANTGLSHLWLISNQFTVDGIK
NLAEALTHNTALKEICVKGNQLSEEEEKQFVKEKRLQFH
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
atgggtcggatggaagaagcccaggcgtcgtgccttaacatcctcacctaccacagggag
ctgctggtgtccaggttgaggagtattcaatgcatcctggacaacctgttggcctgcggc
ttcgtctgtgaagaagatgttgagatcgttcagcgatcggccaccaagacagatcaggtg
cgcaaaatcttggagctagtacaatgcaaaggggaggaggcctgtcagtactttatttac
atcatatataaagtatgtgacgcatacatagacctccagccatggttgaaagagatcaac
ttcaccccaagcattgatgtaacggcgatgacagtggttaacaccgatcccatcagcagg
tattgtgagaagttgaggcatgagatgagccgggacaccagcttcatcatgtcatacggc
cagcgggaggagacccgtctggaggacctttacactgacacacagatggaactgctgaac
gactgcaatgaaagtttggacttcttggagagtctggaccagctcctaggagaccatgcg
gtcttcaatccacaaggtgaaaccatctatgtgatgggggatgccggtgtggggaaatcc
atcctcctgcagaagctccagaacctctggtccaagaaagagctgcagacggacgccatc
ttcttctttaagttccgctgtaggatgttcagcatcttcaaggactcagatcagatctcc
ctcagagaccttttgttcaaatacaactgctacccagatcacgatccagatgatgaggtg
tttgactacatcctgcgcttcccagagaaggttctcttcacatttgacggatatgatgag
attcagatgaatgacctgactaatgtcactgaagtggtgtcaccagaagtcaaggcgcac
cctctccagctgctcatcagcttgctctgtgggaaactactcaagggctcccagaaggtg
ctgacggcccgaacgggtaccgagatccagagcagggtgatcagaaagaaagtgtctctg
cgggggttctctccagctcatctgaagacctacatcgatctccacttcaaggaacaggag
caccgagatctggtgtcagttcagctggatgccagcccccacctctgtggcctctgctcc
accccgctgttctgctggattgtactgaagagctttagccacctgcacaccatgcacgat
agctttcatctgcctgaaacctgcatcacactcacggacatcttcctcctgctgtctgag
gtcttcctcagccgccttggctcgcctgcgccgtctctgctgaagaaaagaactcggtgt
gtctcagagaccttcaaagcggggctcaggcctctttcagcatttgccaaactggccctt
cagggtatggagagaggtagcttcatttacagccaggaggagatcactgagtgcggcctg
tcagaggaggacctgaccctgggctttcttagacctgtcactgagtatgatgccagtggg
agccccgctacatttgaagtcctccatatcatcctccagtctttcctggcggcgtttgct
cttgtgttagatgagcaggctgctgccggctccatcctcaagttcttcacagagtgcagc
aggaaaaaagaatcgtgtctgcctttcaacttctgcatctgtggctcctcgcagtccaac
gaaaagacgccatttgaaacaaatgaacacctccagttcactaatctgttcttgtgtgga
ctgctgtccaaggctaacgtcggcctgatggagcacctggtgtcccctgtgttattaaag
aaaaaacgggccttgctgaaatcctacctctccaccagtgtaaagtcccacctcttggga
ttaccccacttcaacggcgaagagggcaagaaagttcacgttttgcccaacttcctgtgg
atgctgcggtgcatctttgagacaggcagcaaagacatcgcacagatgacagcgaaaggc
atcacagctggcttcatcaagctgggttactgcaatgtgttctcaggcgactgcaccgcc
ctgaactttgtactgcagcaccgtcggaagcacctgggccttgacatggacaacaacaac
atcagtgactatggggtgaagcagctgaggccctccttctctaagatgacaatagtaaga
ttctgtgtcaatcacctgtctgacagcagcatcgaggttcttgcagaggagctgtgtaag
cacaaagttgtggaggtcttgggactttacaacaatcacatcacagatgttggagccaag
ctagttgctcagataattgaggaatgcccaaagctgcgaattgtcaagattggtaaaaac
aagatcactagtgttggtgggaggcatttggccaacgcgattcagaggagcacctctata
tttgatgtgggtatgtgggggaacagcatcggcgatgagggagcagaagcatttgctgaa
tgtctgaggcatcacccgagtctcaccaacctcagtctctcagccaacggcatcacatct
aaaggtgggaagtacctggcagaagcgctgaaagagaacagcgttctcaggatattctgg
ttagtgcagaatgagttgactgatgatgccactccatacttggctgacttggtccaagcc
aacacaggtttaagccacctctggttaatcagcaaccagttcactgtggatgggatcaaa
aacctcgctgaggccctcactcacaacacagcactcaaagagatatgtgtgaaaggaaac
cagctctctgaagaggaagagaaacagtttgtgaaggagaaaaggctgcagttccactga
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