Anoplopoma fimbria (sablefish): 129110049
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Entry
129110049 CDS
T09102
Symbol
thbs3a
Name
(RefSeq) thrombospondin-3a
KO
K04659
thrombospondin 2/3/4/5
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04145
Phagosome
afb04510
Focal adhesion
afb04512
ECM-receptor interaction
afb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129110049 (thbs3a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
129110049 (thbs3a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
129110049 (thbs3a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129110049 (thbs3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
afb04131
]
129110049 (thbs3a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
afb04147
]
129110049 (thbs3a)
00536 Glycosaminoglycan binding proteins [BR:
afb00536
]
129110049 (thbs3a)
Membrane trafficking [BR:
afb04131
]
Endocytosis
Phagocytosis
Opsonins
129110049 (thbs3a)
Exosome [BR:
afb04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129110049 (thbs3a)
Exosomal proteins of colorectal cancer cells
129110049 (thbs3a)
Exosomal proteins of bladder cancer cells
129110049 (thbs3a)
Glycosaminoglycan binding proteins [BR:
afb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129110049 (thbs3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
EGF_3
EGF_MSP1_1
EGF
Motif
Other DBs
NCBI-GeneID:
129110049
NCBI-ProteinID:
XP_054478178
LinkDB
All DBs
Position
20:27708438..27722788
Genome browser
AA seq
948 aa
AA seq
DB search
MGCRVPVLLSLICVGLTVGAPDNQVIDVLSLQDSKQSVAAVERLSGGLSALSDVYVASTF
RLPAKLGGVLLGVYSKQDNRKYLEVAVMGKINKVVVRYVRSDGKLQTVNLQSLLLAEGRS
TSILLRLGGLRRDTMNMELYVNCRLADSSQGLPSLVALPREAELVEIRHGQKAYGRLQGA
VESLRLALGGTVAKAGALTDCPFQGDASAYNSVSGEMNSILGDHTKALIGQLIIFNQILG
ELRLDIREQVKEMSLIRNTILECQVCGFHEPRSRCSPNPCYKGVSCMDSVHYPGYTCGPC
PPGTSGNGTHCQDINECELQPCFSPESCVNTVGGFICHPCPPGLWGAPLAGTGLDYAKTH
RQDCVDIDECLDLPDACVSNSVCINSVGSYKCGGCKPGFLGNQTSGCFPRKSCAALTFNP
CDVNAHCTMERNGEVACVCNVGWAGNGNTCGPDTDIDGYPDRSLPCMDNDKHCKQDNCVF
TPNSGQEDADNDGIGDQCDEDADGDGIKNVEDNCRLVPNKDQQNSDSDSFGDSCDNCPNV
PNTDQKDTDSNGQGDACDQDIDGDGIPNVLDNCPKVPNPMQTDRDRDGVGDACDSCPELS
NPMQTDIDNDLVGDVCDTNMDTDGDGLQDSRDNCPDIPNSSQLDSDNDGLGDDCDHDDDN
DGVLDDYDNCRLIVNPNQKDSDVNGVGDVCENDFDNDSVMDLYDACPESAEVTLTDFRAY
QTVILDPEGDAQIDPTWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVNTITDD
DYAGFIFGYQDSSSFYVVMWKQTEQTYWQSVPFRAMAQPALQLKAVKSRTGPGEFLRNAL
WHTGDTPGEVKLLWKDPRNVGWKDKTSYRWHLSHRPQVGYIRVRLFEGRDLVADSGVVVD
TTMRGGRLGVFCFSQENIIWSNLRYRCNDTVPEDFQTHRKQFMMHIQL
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcagggtcccggttctgctgtcactcatctgtgtgggactcacggtgggagca
ccggacaatcaagtgatcgacgtgttgagtcttcaggactctaagcagagcgtggcggcg
gtggagcggctgtccggcggtctgagcgcgctcagtgacgtctacgtggcgtcaaccttt
cggctgccggccaaactgggcggagtcctgctgggcgtctacagcaaacaggacaacagg
aagtacctggaggtcgccgtcatgggcaagatcaataaagtggtggtgcgttacgtccgt
tctgatgggaagctccagacggtgaacctgcagagcctcctcctggctgaggggaggtcc
acctccatcctcctcagactgggaggtctccgtcgtgacaccatgaacatggagctctac
gtcaactgccgattggccgactccagtcagggcctgccgtcattggtcgccctgcccaga
gaggcggagctagtggagatcagacacggacagaaggcctacggacgcctgcagggagcg
gtggagtccctcagactggctctaggggggaccgtggctaaagctggggctctgacggac
tgtcccttccaaggggacgcttcagcctacaactcagtgagcggggagatgaactccatc
ctgggtgatcacaccaaggctctgattggtcagctcatcatcttcaaccagatcctggga
gaactgagactggacatcagagaacaggtgaaggagatgtctctgatcaggaacaccatc
ctggagtgtcaggtttgtggtttccatgagcctcgttcccgctgctctcctaacccctgc
tacaagggcgtgtcctgcatggacagtgtgcattacccaggatacacctgtggaccctgt
ccacctggaaccagcggcaacgggacgcactgtcaggacatcaacgagtgtgagctgcag
ccttgtttctctcctgagtcctgtgtgaacactgtgggggggttcatctgtcacccctgt
cctcctggtctgtggggggcaccgctggctggaaccggactggactacgccaagacacac
agacaggactgtgtggacattgatgagtgtttagatcttccagacgcctgcgtatcaaac
tctgtgtgcatcaacagcgtgggctcatacaagtgtggaggctgtaaacccggtttcctc
ggcaaccagacgtcgggatgcttccccaggaagtcgtgcgctgcgttgacctttaacccc
tgtgacgtcaacgcccactgcaccatggagaggaacggagaggtggcgtgtgtgtgtaac
gtgggctgggctggtaacggtaacacgtgtggaccggacacagacatcgacggttacccc
gaccgctctctgccctgcatggacaacgacaaacactgcaaacaggacaactgtgtcttc
acaccgaactctggtcaggaagacgccgacaacgacgggatcggagaccagtgtgacgag
gacgccgacggagacggcatcaaaaacgtggaggataactgccggttggtcccaaacaaa
gaccagcagaactcggacagcgactcgttcggagactcttgtgataactgtcccaacgtc
cccaacaccgaccagaaggacaccgacagcaacggacagggagacgcctgtgaccaggac
atcgacggggacggcattcccaacgttctggataactgtccgaaggtaccgaacccgatg
cagacggacagagacagagacggagtgggagacgcctgtgacagctgtcctgagctcagt
aaccccatgcagacggacattgacaacgacctggtgggagacgtttgtgacaccaacatg
gacacggacggagacggtctccaggacagcagagacaactgtcccgacatccccaacagc
tcccagctggactctgataacgacggcctcggagacgactgcgaccatgacgatgacaac
gacggcgtcctcgacgactacgacaactgccgactcatcgttaaccccaaccagaaagac
tctgacgtgaacggtgtcggcgacgtgtgtgagaatgactttgataacgattcggtgatg
gatttgtatgacgcttgtccggagagcgctgaggtcactctgacggacttcagagcctat
cagacggtgatcctggacccagagggcgacgcccagatcgaccccacctgggtggttctc
aaccagggtatggagatagtccagaccatgaacagtgaccctggtctagctgtgggctac
acggcgttcaacggcgtcgacttcgagggaacgtttcacgtcaacacgataaccgacgac
gactacgccggcttcatcttcgggtaccaggactcctccagcttctacgtggtgatgtgg
aaacagacggagcagacctactggcagtccgtccccttcagagccatggcccagcccgcc
ctgcagctcaaggcggtgaagtctcggactggaccaggagagttcctgaggaacgccctg
tggcacaccggagacacacctggagaggtgaagctgctctggaaggatccacggaacgtc
ggctggaaggacaaaacctcgtaccgctggcacctcagccaccggccccaggtgggctac
atcagggtgaggctgtttgaggggagggacttggtggctgactccggcgtggtggtcgac
accacgatgagaggaggacgactcggtgttttctgtttctctcaggaaaacatcatctgg
tccaacctgcgctacaggtgtaacgacacggtgcccgaagacttccagactcatcgtaaa
caatttatgatgcacatccagctgtga
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