Anoplopoma fimbria (sablefish): 129110126
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Entry
129110126 CDS
T09102
Symbol
smg9
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9
KO
K18735
protein SMG9
Organism
afb
Anoplopoma fimbria (sablefish)
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
afb03019
]
129110126 (smg9)
Messenger RNA biogenesis [BR:
afb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129110126 (smg9)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
BrxC-PglY_N
AAA_16
URGCP_GTPase
AAA_18
NB-ARC
AAA_29
MeaB
Motif
Other DBs
NCBI-GeneID:
129110126
NCBI-ProteinID:
XP_054478273
LinkDB
All DBs
Position
20
Genome browser
AA seq
508 aa
AA seq
DB search
MSESGHSQPGIYGQGRRRRRRRGDRDAGPPGQNLSGPSRDREYQPRERRDGSEDPPGPLI
QKTPIILAKPPGERAKPSQTTPVSGAPVLEKPIMLMKAREDGGKLGTPPDAAAQPSGPGP
SKMEREGQRPTQPVYQIQNRGMGASASSSAVDPMVGQSKLLPPEKMKHSIKLVDDQMNWC
DSAMEYLRDQTDMLVVGVIGLQGSGKSTIMSLLSANTPEEDQRGYVFRAQTQEIKERGGN
QSTGIDFFITQERVIFLDTQPMLSPSILDHLINNDRKLPPEYNLPHTYVEMQSLQTAAFL
FTVCHVVIVVQDWFTDLNLYRFLQTAEMLKPSTPSASHDSTGSSGNDDGAEYYPHIVFLQ
NKARQDDFCPRNLKNMHMVVDKLMAHSHLKYKGTLSMLDCNMFPGLEQDYLATEVNMFLL
PMQENDGEDNLTKAGTGTYPLFSLLPGYRGHPAFSTMVSKLRSQILAMPRCQLSHTILTE
KNWFHYAARIWDGVKKSSALSEYSRLLC
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtccggtcacagtcagcccgggatatacggacaaggacgcaggaggaggcga
cgccgcggggacagagatgcaggacctccgggacaaaacctgtccggtcccagtcgggat
cgagaatatcaaccgagggaacgcagggatgggagcgaggatccaccaggtccactcatt
cagaagacccccatcattcttgcaaaaccccctggggaaagggccaagccctcacagact
acacctgtcagtggagctccagtcctggagaagcccatcatgctaatgaaagccagggaa
gatggagggaagctgggtacccctccagatgcagcagctcaaccctctggtcctgggccc
tccaagatggagagggaggggcagcgacccacgcagcctgtataccagatccaaaacaga
ggaatgggtgcttctgcatcgagcagcgctgtggaccccatggttggccagtctaaactc
ctccctcctgagaagatgaagcacagcattaagcttgtggatgaccagatgaattggtgt
gacagtgctatggagtatctgagggaccagacagatatgttggtggtcggagtcattggc
ttgcagggaagtgggaaatctacaatcatgtcactgttatctgcaaacactccagaggaa
gatcaaaggggctatgtattcagagcccagactcaagaaatcaaggaaagaggaggaaac
cagagtacaggcatcgatttcttcatcacacaggagagagtcatcttcctggatacacag
ccaatgctcagcccgtctatcctcgaccacctcatcaacaacgatcgcaagttgccccca
gagtacaacctccctcacacatatgttgagatgcagtctcttcagaccgcagccttcctg
tttacagtgtgccatgtggtgattgtggtccaagactggttcactgacttaaacctctac
aggtttcttcagaccgctgagatgttgaaaccctccactccctctgcaagccatgacagc
actggctcttcaggcaatgacgatggagcagagtactatcctcatatagtgttcctccag
aataaagccagacaggatgatttctgcccaaggaatctcaagaacatgcatatggttgtg
gacaaattaatggcccactctcatctcaaatacaaaggtacattgtccatgctagactgc
aatatgttccctggtttggagcaggactatctggcaactgaagtcaacatgttcctcctt
cctatgcaggagaatgatggggaggataatctgactaaagcagggacgggaacatacccg
ctgttctctcttctcccggggtacagaggacatcctgccttctcaaccatggtttcaaaa
ctccgcagccaaatattggctatgccccgctgtcagctgtcacacaccattctcactgag
aagaactggtttcactatgcagctcgtatctgggatggggtgaaaaagtcctcggccctc
tcagagtacagccgcctgctctgctaa
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