Anoplopoma fimbria (sablefish): 129110241
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Entry
129110241 CDS
T09102
Name
(RefSeq) E3 ubiquitin-protein ligase NHLRC1-like
KO
K10602
E3 ubiquitin-protein ligase NHLRC1 [EC:
2.3.2.27
]
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
129110241
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
afb04121
]
129110241
Enzymes [BR:
afb01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
129110241
Ubiquitin system [BR:
afb04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
129110241
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
Zf-C2H2_ZNF451_2nd
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
129110241
NCBI-ProteinID:
XP_054478400
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All DBs
Position
20:734130..735461
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AA seq
414 aa
AA seq
DB search
MAESLGSPSRGNLSPEGILRDIQINLLECKVCFEKFSTQQKERKPQNLSCGHVLCLECIR
ALSHPLLRKLECPFCRQLCSVDSTSHCQALSDLQELLLSRTPPSSSAPQRAKAGLGLDAS
LTSTAPRLCTAFGGWGTLINPTGIAVLGSSGTIVVVHDGEKRVAVFSPQGRKLHSFGRRG
QGSGEICFPVDVAVTPCGHLVVTDAGDKAVKVFTSRGNHVLTVKDSFQMPWGVDTNSCGH
ILVSDIKVGTLSQLKVDYTRGLALEHQTAIADLQHPRAVACCWVTGNTAVMEHLTDDTYP
PGRHQHTRLRVFTKDFHLLYQTDSFSLTLQFPVRLHMSGVAFDEDGGVIVIDSNQGMIWS
LGKLQNGPALTPLVGDHLIRPVGLVSLNNTLVVLDSGDHTVKSFSAKYEAGPMI
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggccgagagtcttggttccccgagtcgtggcaacctgagtcctgaggggattttgaga
gatatccagatcaacttgctggagtgtaaagtctgcttcgagaagttcagcactcagcag
aaggagcgcaaaccacagaacctctcctgtggccatgtactctgtctggaatgcatcagg
gctctgtcccaccctctcctgaggaagctggagtgcccgttctgtcgacagctgtgcagt
gttgacagcacctcccactgccaggctcttagtgacctgcaggagctgctgttgtcccgg
actcccccatcatcttctgctcctcaaagggcaaaggcaggccttggcttggatgcaagt
ctaacatccacagctccgcgcctctgtacagcttttggagggtgggggactcttatcaat
cccactggcatagccgttttgggatcgtcagggacgatagtggtggtgcatgatggagag
aagagggtggcggtgttcagtccacagggcagaaagctgcacagttttgggagaagagga
caaggcagtggggagatatgttttcctgtggatgtggcggtgactccctgtggtcacctg
gtggttactgatgcaggggataaagctgtgaaggtcttcacctccaggggtaatcatgtt
ttgacggtcaaagattccttccagatgccctggggtgtggacacaaacagctgtgggcac
atcctggtctcagacatcaaggtcggcacgttgtcccagttaaaagttgactatactcga
ggcctcgctctagagcatcaaacagccattgcagacctgcagcatccgagagcggtggcc
tgctgttgggtgactgggaacactgcagtgatggagcatttaactgatgacacatatcca
ccagggaggcaccaacacacgaggctaagagtttttacaaaagactttcacctcctttat
cagactgacagtttcagcctgaccctgcagttcccagtgaggctccacatgtcgggcgtg
gcctttgacgaagatggaggtgtgattgtgattgactccaatcaggggatgatttggagt
ttggggaagctccagaatggcccagccctgaccccacttgtgggagatcacctcatccgt
ccagttggacttgtgtcactgaacaacacccttgtcgttctggacagtggagaccatact
gtgaagagtttttctgctaaatatgaagctgggcccatgatatag
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