Anoplopoma fimbria (sablefish): 129110418
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Entry
129110418 CDS
T09102
Name
(RefSeq) partitioning defective 3 homolog isoform X1
KO
K04237
partitioning defective protein 3
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb04144
Endocytosis
afb04517
IgSF CAM signaling
afb04520
Adherens junction
afb04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
129110418
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
129110418
09144 Cellular community - eukaryotes
04520 Adherens junction
129110418
04530 Tight junction
129110418
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
afb01009
]
129110418
Protein phosphatases and associated proteins [BR:
afb01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
129110418
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Par3_HAL_N_term
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
129110418
NCBI-ProteinID:
XP_054478469
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All DBs
Position
21:complement(14689227..15014531)
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AA seq
1384 aa
AA seq
DB search
MKVTVCFGRTRVVVPCGDGNIQVHSLIEQAAMRYKKAIAKDPSYWVQVHRLEHGDGGILD
LDDMLCDVVDDKDRLVAVYEEQDPHNGGDGTSASSTGTQSPEPFAADMSSASAFQPRQPN
SEIEVTPSALRSNMPLHVRRSSDPSLAGLPPGEVPVNPEEPSRKNPTRWSTTAGSQKHNP
KPNASAGIGIGRLEEKGRGGHAYRSLPRDTSGWTTQFQREMTRSSLSAHHPMVDQWLDRQ
EQEEEEEERRRHERRIERIEPIGRADSSLEHSPVFSLEGLLKPVEVSNGGGPLGIHVLPL
SSHDARTQGLLVKRLERGGKAEQERLFQENDCIIKINQEDIRHLRFEQAQSIFKQAMRGT
VILFHVVPAAMKRQYELLMAHTELSPPQPNRVRFSQVSLQSGDRSSLVGGLMPRSGPQPV
LNHDHQGPLAGSTPELSRRYATLPHTLVTRTPSAPSPSLQRRISTNTSTSSYLKNKGRKF
NIQLKKGPEGLGFSITSRDVPIGGSAPIYVKNILPRGAAIQDGRLKAGDRLLEVSGVDLN
GKSQEEVVALLRATPMGGTVNLLVIRPEDSLLPREVHSEEDDMVLTPDGTQEFMTFEIPL
SDSGSAGLGVSVKGNRSKENHADLGIFVKSIINGGAASKDGRLRVNDQLIAVNGESLHGM
TNQDAMETLRTSMSVEGNRRGMIQLIVARHVSKNNEEAPSSPPILEHPVNSLLDNHERRI
SNSVYESIEGLDGNSTPLPNMIGRIGNYQLSPTVNMPQDDVVMIEDDRPPPLPAHLSDQS
SSSSHDDMGFVGEDPVSWIHELPGQNECSLSPDAEADPDGSFQREGFGRQSMSEKRIKQY
ESAAELEIIKTRKSKSMDLGVAEQVLGPLLGLKKSSSLESLQTAVAEASLNGKINVKRPH
SRIVRGRGCNESFRAAIDKSYETPVVTPAEEENSIDTLDEDTEGSSRSGRESMSTSSDLN
VGPGLNGNPSKDDRQRDRDKAGGKEKKKPERDKEREKDRSKSKKGVLKGLGDMFRFGKHR
KDEQPGDRMERKGSSKSKAEDMQASEEETMRMRLEQERIQAKMRELRDKQAKEREYAEIQ
DVVGGAFSSDEEHTYAGIGSLDSSVDSSSMEPYSHHYHLPQSPQSPHPPLSLQDNGPPLE
ALYAQVNKPRNGRAPAPDSSHMAPSNHDRIQMLRHEFQQARQEDDVEDHSHTYGFNQSWV
SNGTETPSGRHSVAVETQVQKQQQEDIDGFQQAQRQYNSLPRQPRKNPSTASQDSWDKDY
VPAEELQTSQENPRYSGSHGSRNGYLAMSGFNARVLLETQELLRQEQRRREQEANKTRPP
PAQETPIGGIYDHGRVHAQAPGPAPVQAPPQSKGPYRQDVPPSPSQLAKLSRLQGSEKGR
LFYS
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtgacggtgtgtttcgggaggaccagggtggtcgtcccgtgtggagatgggaat
atacaagtccacagcctcatcgagcaggcggccatgaggtacaagaaggcgatcgcaaag
gaccccagctactgggtccaggtccacaggttggaacatggggatggaggcattttggac
ctggatgacatgctatgcgatgtggtggatgacaaagataggctggtagcagtatatgaa
gagcaggatcctcacaatggaggtgacggtaccagtgccagctccaccggtacgcagagt
cccgaaccgttcgccgctgacatgagttcagcgtcggcctttcagccccgccagcccaac
agtgagatcgaggtcaccccgtccgctctgcgatccaacatgcctctccatgtacgtcgt
agtagtgatccctccctcgccggccttcctccaggcgaagtcccggtcaatccagaagaa
ccgtccagaaagaacccaactcgctggtccacaactgctggctcccaaaagcacaacccc
aaaccaaacgcaagtgccggcatcggcatcggcagactggaagaaaagggtagaggagga
catgcctatcggagtcttcctcgtgatacaagtggctggaccactcagttccagagagaa
atgactcgatcgtctcttagtgcccaccatccaatggtggaccaatggctggacagacag
gaacaggaggaggaggaagaagagcgaaggagacatgaaaggaggattgaaaggattgag
ccaatagggagggccgattcctcattggaacattcacctgtgttcagtctagaaggcctg
ctcaagccggtcgaggtgtccaacggaggcgggcccctggggatccacgtattgcctctc
agttcgcacgatgccaggactcagggcttgctagtgaagcgtctggagcgcggggggaaa
gccgagcaggagcgtctcttccaggagaacgactgtatcatcaaaattaatcaggaagac
attcgccacctgcgcttcgaacaagcccagagcattttcaagcaggcgatgcgtggcacg
gtcatcctcttccacgtggtccccgccgccatgaagaggcagtacgagctgctgatggcc
cacaccgagctcagcccgccacagcccaacagagtccgcttcagccaagtctccctgcag
tccggggataggtccagcctggtgggggggctgatgcccagatctggaccacaaccagtc
ctcaaccacgaccaccagggacccctggcaggaagcacccctgagctgagccgacggtac
gccaccttaccccacaccttggtcaccaggaccccttcagccccctccccctccctgcag
cgcaggataagcacaaacacgtccaccagctcctacttaaagaacaagggacgcaaattc
aacatccagctgaagaaaggtccagagggcctcgggttcagcatcacatccagagacgtc
cccattggtggcagtgctcccatttatgtcaaaaacatccttcctcgaggggccgccatc
caagatggccgattgaaagctggagaccgactgctggaggtcagtggagtggacctgaat
ggtaagagccaggaggaggtggtggcccttctccgagcaacgcccatgggtgggactgtg
aacctgttggtgatccgccctgaggactcccttctgcccagagaagtgcattcagaggaa
gatgacatggtattgaccccagacggcacacaagagttcatgacctttgagatccctctg
agtgactccggctcggcaggcctgggggtcagcgtcaagggcaaccggtccaaggagaac
cacgccgacttgggcatctttgtaaaatccataattaatggaggtgctgctagcaaggac
ggccgtctacgagtcaacgaccagctcatcgcagtcaacggggagtcgctgcatgggatg
accaaccaggacgccatggagacgctgcgcacgtccatgtccgtagaaggcaacaggcgg
gggatgattcagctcatcgtggcccggcacgtctccaaaaacaatgaggaagccccttcc
agccccccaattctagagcatccagtgaactctctactggacaaccacgagcgccgcatc
tccaactccgtgtatgaatccatcgaaggcttggacggcaactccacgccgctgcctaat
atgatcggacgcattggtaactaccagctctctcctacagtgaacatgccccaggacgac
gtagtgatgatcgaagacgataggccgcccccacttcctgcccatctctccgaccaatcg
tcctccagttcccacgatgacatgggctttgtgggagaggaccccgtgtcctggatccac
gagctgcccggtcagaatgaatgctcgctcagtccagacgcagaagccgaccctgacggc
tcgtttcagagggagggcttcggccgccagagcatgtctgaaaaacgcatcaaacaatac
gaaagtgccgctgagctggagatcatcaagacgcgcaagtccaagagcatggatctgggt
gtcgcagaacaagtcctcggacccttgctgggccttaaaaagtccagctcccttgaaagc
ctccagactgccgttgccgaggcttcgctgaacggcaagatcaacgttaaaaggccgcac
tcgcggatcgtcaggggccgcggctgcaacgagagcttccgggccgcgatcgacaaatca
tacgagacacctgtcgtcacaccggcagaagaggagaacagcattgacacattggacgag
gacaccgagggaagctccaggtcaggtcgcgagtcgatgtccaccagcagcgacctcaat
gtgggacccggtttgaacggcaacccctccaaagacgacaggcagagagatcgggacaag
gctggggggaaggagaagaagaaacccgaaagggacaaagagagggagaaggacaggagc
aaatccaagaaaggcgtgctgaagggcctgggcgacatgttcaggttcggaaagcaccgg
aaggatgagcagccgggagacaggatggagaggaagggctccagcaaatctaaagctgag
gacatgcaggcgtcagaggaggagaccatgcggatgaggctggagcaagagagaatacag
gccaagatgcgggagcttcgggataagcaggcaaaggagagggaatatgctgagatccaa
gacgttgtcggcggtgccttcagctcagatgaggagcacacctacgccggcattggatca
ttagactcgtcggtggacagcagcagcatggagccttacagccaccactaccatctcccc
cagagtccccagagtcctcaccctcccttgagcctacaggacaacggtccacccctggag
gccctgtatgcccaggtcaacaagccgcgcaatggacgagctccagctccagacagcagt
cacatggctcccagtaaccacgaccggatacaaatgctgaggcacgagttccagcaggct
aggcaggaggacgacgtggaggaccacagtcacacctacggcttcaaccagtcctgggtg
agcaatgggacggagactccaagcggccgccattcggtagcagttgagacacaggtccag
aaacagcagcaagaggacatagatggtttccaacaagcccagagacagtacaactccctg
ccacggcaacctcgaaagaaccccagcacggcgtcccaggactcgtgggacaaggattac
gtgccagcagaggaactccagacatcccaggagaacccccgctactccggcagccacggg
tcacgtaacggctacctggcaatgtccggcttcaacgcccgtgtcctcttggagacccag
gagctgctgaggcaggagcagagacgcagagagcaggaggccaacaagaccaggccgcct
cccgcgcaggagaccccaattggaggcatctacgaccacggcagggtccacgctcaggcc
ccaggccccgccccggtgcaggccccacctcagtccaagggcccgtacagacaggacgta
cccccgtcgccctctcaactcgccaagctcagcaggctgcagggttcagagaaagggagg
cttttttactcctga
DBGET
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