Anoplopoma fimbria (sablefish): 129110928
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Entry
129110928 CDS
T09102
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
afb
Anoplopoma fimbria (sablefish)
Pathway
afb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
afb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129110928 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
afb03032
]
129110928 (topbp1)
03400 DNA repair and recombination proteins [BR:
afb03400
]
129110928 (topbp1)
DNA replication proteins [BR:
afb03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
129110928 (topbp1)
DNA repair and recombination proteins [BR:
afb03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
129110928 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
129110928
NCBI-ProteinID:
XP_054479173
LinkDB
All DBs
Position
21:6290421..6305357
Genome browser
AA seq
1515 aa
AA seq
DB search
MSTGDREGFIVKFVESRAEKTEHAVKAYEAILELQSDKYLKTIDEDAVFQMDQKDKSLFV
LSSFTSPAFLHCKKLGCRVVSPLVVLYCLQKQHCVPKAETPVYNMAMADITVSCTSLDKA
TRAEVMDLVQLMGGRVYLDLNVSVTHLVTGEVGSKKYLVAASLGKPVLLPTWVKACWEKS
QNSLFRYTDLPIEDYLCPVLRGCTVCVTGLSSTERKEVQRLCDQHGANYTGQLKMNECTH
LIVSEPTGQKYECARKWNVYCVSLHWLFDSIEKGFCQDESRYIVERNTSKTTRPHTSTPT
GTNKKEEGQSLLGLSHISVNASMTINDTALTNGTISRLDAPDPIDTLDLTVCPADDIFDG
CKMYLCGLPGKKLEKLRRLVNAAGGLRFNQPSEELTHVVMGELDQDLKNFLSKATHRPHV
VTVQWLLDSFNEASLLPEASYLHPDCLPLAPAAVSVSARRTLTSRQSAGPPAASPSTPRQ
TRAEEDLLSQYMDDDPTVVDMPPPAEGYSRKSISTSAEPWAPNLTRGPEPDSTLQEASGA
GLFFGKCFLLVGFGAEAETQLSLLVTENGGRVLMGRTRVVADYAVVPLLGCSVEATVDEV
VTDTWLAMCVEKECVLQLSSNPLFTPVPLMDGRFPLKDCVLSVSQFTGAERESLVELAKH
LGANVQDYFVRLANQKKGMLASSHLVLQSPEGTKYQAAKKWGLPAVTMHWILESARTGQR
AEEGRFLVDLPPSPERDDESFVGGSQKPAMPPPALWSPEIPLLGLQSGKAVTPLDLGRLR
SKVLRSVLDEMKPKGDISTPKQNQGSGRKNPPEKEASLQLDTPSRFLSRDQLFRPTFNFK
DARGALETPGGKSKPAERVETPLTDVINRNLKVSIANSSRNSTSDMQAITASPQFTKTTE
KEVPEKEAGPLTGVVVCVGKKLSKMQSELNAIAASLGADFRWACDDTVTHYIYQGRVGDN
TREYRGVKERGLHVVSQYWLEACAEEQKHVPESLYPFTYNPKMSLNLSQVPNNSQRSPPF
TRTQLKDITETKDEKSGHIATEETTTLRRVSDGSVDQEDTNDAADRSDLSETLEMRENLQ
RQLQEIMSATKLTTGRRTSVRLSRMGSGGADSRPHTPDGSRFGRCGSRRTLEALRVPREA
ALDINTEPSQSEQIVWDDPTAREERAKLADNLQWPGSPSQHSDPLGPPPPPTAESGHQFR
DSMTDSELVEMAACDVIDQHMGQSVTTAPTEEEQNDILTPKAPSIAFPLANPPVAPEPQE
AREEEKQPPRFQLSSLSPQERIDYSHLIEELGGVVLDKQSFDPSCSHIIVGTPLRNEKYL
AAMAAGKWILHRSYLEACRSVDRFIQEDEYEWGSSSILDALPSITSQQRRLALAAMRWRK
NLQGRSDQGGAFSGWTVMLNIDQNRESGFRRLLQSGRAKVLPSPSPSLYKEATHLFADFS
RLKPGDFRVDVSEATSNGVTCLKPEYIADYLMQEPIPPMELYHLTEAASEEAPGTPSRKR
KAAADNSKLKKTRLN
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaggagacagggaaggcttcattgtgaagtttgtggaaagcagagcagagaaa
acagagcatgctgtcaaagcttatgaggccattttggagctgcagtctgataagtacctg
aaaaccatcgatgaagatgcagttttccagatggaccagaaggacaagtctctgttcgtc
ctcagcagcttcacctctccggccttcctgcactgcaaaaagcttggctgcagagtggtg
agtcctctggtggtgttgtactgcctgcagaagcagcattgcgtccccaaagcggagacg
cctgtttataacatggccatggctgacatcactgtttcctgcaccagtttggataaagca
acacgggcagaggtgatggatctggtgcaactcatgggtggacgggtctatcttgatcta
aatgtatcagttacacacctggtaaccggagaggtgggaagcaagaaatacctggtagca
gccagcctgggtaaacccgtcctgctgcccacttgggtcaaagcttgctgggagaaatct
caaaacagtctattcaggtatacagatctacccattgaagactatctgtgtcctgtgctg
cgtggctgcactgtttgtgtgactggcctctccagcactgagcgtaaagaggtgcagcgg
ctctgtgatcagcatggagccaactacaccggtcagctcaaaatgaacgagtgcacacac
ctcatcgtcagtgagccgacaggtcagaagtacgagtgtgcaaggaagtggaacgtgtat
tgcgtgtctctgcactggctgtttgacagcatagagaagggcttttgtcaagacgagagc
aggtacattgtggagcgtaacacatcgaagaccactcgaccgcacacttcaacccccact
ggcaccaacaagaaggaagagggtcaatctctgctgggcttgagccacatctctgtgaac
gctagcatgacaataaatgacaccgccctcactaacggcaccatcagccgcctggacgct
ccagaccccattgatactctggatctcaccgtctgcccagctgatgatatatttgatggt
tgtaagatgtacctgtgtggcctgccggggaagaaactggagaagctgaggcgtcttgtg
aacgctgcaggaggtctgcgcttcaaccagcccagtgaggaactcacacatgtggtgatg
ggagagctggaccaggacctcaagaattttctatctaaagcaacacatagacctcatgta
gtaactgtgcagtggctgctggacagtttcaacgaagccagtctactcccagaagcgagt
tacctccaccctgactgtctgcctctggccccggctgctgtatctgtgtctgcccgccgc
actctcacctcccggcagtcagctggtccccctgcagccagtcccagcactcccaggcag
acaagagcagaggaagatctgctctctcagtacatggatgatgaccctacagtagtggac
atgcccccaccagcagagggctacagcaggaagtccatcagtacatctgctgaaccctgg
gcgccaaacctcaccagaggaccagagccagactccaccctgcaggaagccagcggggca
ggcctgttctttgggaaatgttttcttcttgtgggcttcggtgccgaggcagagacccag
ctctccctactggtgacagaaaatggaggcagggtgctgatgggccgtacacgtgttgtg
gcagactatgcagtggtcccgctgttgggatgttcagtggaggcaacagtggacgaggtg
gtcactgatacctggctggccatgtgtgtggagaaggagtgtgtcctgcagctttcctcc
aaccctttgttcacacctgttcctctgatggacggacgttttcctctcaaagattgcgtt
ctctccgtcagccagttcacaggagcagagagggagtctttggtggagctggccaagcac
cttggagccaatgtccaggattactttgtccgcctggccaaccagaagaaagggatgctg
gcgagctctcatctggtgctgcagagccccgaaggcacaaagtaccaagcagcaaagaaa
tgggggcttccagccgtcaccatgcactggatactagagtctgctcggaccggccagagg
gcagaggaggggcgttttctggttgacctgccgccatcaccagagagggatgatgagagt
tttgtcggtggctcccagaagccagcgatgcctcctccagcactttggtctccagagatc
cctttgctgggtctccagagcggtaaggccgttactccgctggatttaggtcgcctccgg
agcaaagtgttacgctctgtgttggacgagatgaagcccaaaggggacatcagcaccccc
aaacaaaaccaggggagcggcagaaagaacccccctgagaaggaggcctccctgcagctg
gacactccctctcggttcctcagcagagaccagctgttcaggccgactttcaactttaag
gatgcacgaggagcattggagactccagggggtaaatccaaaccagcagagagggtggag
accccactgactgatgtcatcaacaggaacctgaaggtgtctatcgccaatagcagccga
aatagcacctcagatatgcaagccatcactgctagcccccaatttaccaagacgactgag
aaggaggtcccagaaaaagaagccggccctctgactggtgttgtggtctgtgtggggaag
aagctgagcaaaatgcaaagtgaactcaatgccatcgctgcctcgctcggagccgacttc
aggtgggcttgtgacgatacagtgacacactacatctaccagggccgtgtgggggacaac
acccgggaatacagaggagtgaaggagagagggctgcatgtggtctcccagtactggctg
gaggcttgtgccgaggaacagaagcacgtccccgagtctctctaccctttcacctacaac
cccaagatgagcctcaacctcagccaggtgcccaacaactctcagaggtctccacctttt
acacgaacccaactcaaagacatcacagagacaaaggacgagaagtctggacacattgcc
acagaagaaaccacaactttacgccgtgtaagcgacggaagcgtagatcaagaagacacg
aacgatgctgcagacagaagcgatctttcagagactctagaaatgagagagaacctgcag
agacagctccaggagatcatgtcagccaccaagctgacgacagggaggcgtacctcggtc
agactcagcaggatgggatcaggaggagccgactcgagaccgcacacacctgatgggagc
cggttcggacgctgtgggagcagacgtactctggaagctctgagggttcctagagaagca
gctctggacatcaacacagagccatctcagagtgaacagatagtttgggacgaccctaca
gccagagaggagagagccaagctggctgataacttacagtggcctggtagtccgtcacaa
cactctgatccgctcggacctccacctcctcccactgcagagagcggccatcagttcagg
gactccatgacggactctgagctggtggagatggctgcttgtgacgtaatcgatcagcac
atgggccagagtgtcacgacggctccaacagaggaggaacaaaatgacatcctcactccc
aaagcccccagcatcgccttccctctggccaacccccccgttgccccggagccacaggaa
gcgcgtgaggaagagaagcagccgcccagatttcagctgtcctccctcagccctcaggaa
cgcattgattacagtcacctcatagaggaacttggcggtgtagtcctggacaagcagtcc
ttcgaccccagctgctcccacatcatcgtagggactcctctgcgtaacgagaagtacctg
gcggccatggcggcgggcaaatggatcctgcaccgctcgtacctggaggcctgccgctct
gtggatcgcttcatccaggaggatgagtacgagtggggcagtagctccatcctggacgcg
ttgccctccatcacctcccagcagaggagactggcgttggctgccatgcgctggaggaaa
aacctgcaggggcgctctgaccaagggggagccttcagcggatggacggtcatgctgaac
atcgaccagaacagagaatcaggcttcaggcggttactgcagtctggccgggcgaaggtg
ttgcccagtccctccccgtccttgtacaaggaggccactcacctgtttgcagacttcagc
cggctgaagcccggagacttcagagtcgatgtgtcagaggccacttccaacggagtcaca
tgcttgaagccagagtacatcgcagactacctcatgcaggagccgatcccgcctatggag
ctgtaccacctgacagaagctgcctctgaagaagctccaggcactccgtcacgtaagcgc
aaagcagcagcagacaactccaagctgaaaaagacacgtctgaactga
DBGET
integrated database retrieval system
